BAC Information

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BAC

Clone NameMSMg01-159P23
Chromosome5 (Build37)
Map Location 40,681,383 - 40,779,852
singlet/doubletdoublet
Overlap geneLOC100040502
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC208522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159P23.T7 (MSMg01no159_p23.b1)MSMg01-159P23.TJ (MSMg01no159_p23.g1)
ACCAG359782AG359783
length736739
length of high quality
(start - end)		319 (47 - 365)655 (77 - 731)
definitionCHROMAT_FILE: MSMg01no159_p23.b1 PHD_FILE: MSMg01no159_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:50 2005CHROMAT_FILE: MSMg01no159_p23.g1 PHD_FILE: MSMg01no159_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,779,569 - 40,779,852)(40,681,383 - 40,682,037)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAGATTACAAAGAAGAGATTCATGTAACTTGGAACAGTGCTGA
GACATAAGTCACAAGATGCCATCCCTTCTCTTTACCTAGTCAGTAATTTT
CAGTTCTTGTTAACAAAGTAAGGTATGAGTTGATAATTAATAAACTCATT
TTATATAAATATCTAATAATAAGACATATATTATAACATAAATGTATAAC
ATATATTGTGTATGTTATATATAACATATAAAATATACTAATATAACAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAG
ATAGATAGATAGATATTTTTTCTCCCCCCCCCCCCCCCNNNNNNNTNNNT
NNNNNNNNNNNNNNNTTCCCCCCCCAAAAAAAAAAAAAAAATTTTTTTGC
TTTTTCTTCTCTTCCTTTCCTCTTTTTTTTTCTCCTCTTCTTCCCTCTTT
CTCCCCTTCTCTTTCTCTTATCTCCTCCTCTCCTTCTTTTTCTTTTTATT
TATAATCCCTACAAACTACTTTTATTTCTCCTTCTTCTCTCTCTTTCCTT
CTTCTCCTCTCCCTTCCCTCTTACCCTCTCCTCCCCCCTTCCCCTTTTTA
CCCCCACTTCCCCCTCCCCTCTTTTTCTTCCCTCTTTTTCTTTCCTTCTT
CACTTCCTCCTCTTACTTTTTCTTTTCTATTTTCCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGCTCATGGAATGAAGCC
AGTTCTTCATTACTCATACTTCTCTTTGTGTCTTTAAGAGCTGCAGGTAC
TTTTTTCTCTACTTTTCCTAGGAGATGTATCTGTTCCAGAAAATTCAGCC
AACTGGCATCTAACAAATTTGTCCCTTCATAATCTTAGGCAATTCCTGTT
TCAAACTTAGAGAAGACCCTCAGGAACTTCCTAATTCAAACTTAGAAAAG
ACCCAGTAAAAATTTCTCTATCCCATAATCAAGATTCACACTCCCTTAAA
TGAAGAATGCCCTTGTGTTAGTCTAATCTAACTCCTTTTAGCTTATGCTA
TGATTCTTAGATGTAAGATATTTTAAAAAGTGCCCAGAATCCTCAACATT
CCAGAGCATTGACAATCAGTTGCTTGGGCACCCAATATGAGTGCTTGATT
TATGTTGTACAGTTGTTCACTACTTCTGCTCCTCCTGCTGGGAATGGCCT
TTGCACCTTTCGTACCTCTTTTATTCAGAGATAATATGTTTTCATAATTA
TATACTGGCAATAAAGTTGGATGAGGAAGAGAAGAGCAATTTCCTCTCTC
TTTACTGTGCTTCTGTTCTGTGTTTTTCTGCCAGACTCAAATCACTCGAG
GAAAAGAGGCTAAATTGAAATGAAAGAGGCCAGAGCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_p23.b1 MSMg01no159_p23.b1 CHROMAT_FILE:
MSMg01no159_p23.b1 PHD_FILE: MSMg01no159_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:50 2005
         (319 letters)



>mm_chr5_40779517_40780235
          Length = 719

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagattacaaagaagagattcatgtaacttggaacagtgctgagacataagtc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaattctcagattacaaagaagagattcatgtaacttggaacagtgctgagacataagtc 277

                                                                       
Query: 65  acaagatgccatcccttctctttacctagtcagtaattttcagttcttgttaacaaagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 acaagatgccatcccttctctttacctagtcagtaattttcagttcttgttaacaaagta 217

                                                                       
Query: 125 aggtatgagttgataattaataaactcattttatataaatatctaataataagacatata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aggtatgagttgataattaataaactcattttatataaatatctaataataagacatata 157

                                                                       
Query: 185 ttataacataaatgtataacatatattgtgtatgttatatataacatataaaatatacta 244
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 156 ttataacataaatgtataacatatattatgtatgttatatataatatataaaatatacta 97

                                                       
Query: 245 atataacagatagatagatagatagatagatagatagatagata 288
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  atataacagatagatagatagatagatagatagatagatagata 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no159_p23.g1 MSMg01no159_p23.g1 CHROMAT_FILE:
MSMg01no159_p23.g1 PHD_FILE: MSMg01no159_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:50 2005
         (655 letters)



>mm_chr5_40681183_40682237
          Length = 1055

 Score = 1212 bits (627), Expect = 0.0
 Identities = 648/655 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagaggctcatggaatgaagccagttcttcattactcatacttctctttgtgtcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagaggctcatggaatgaagccagttcttcattactcatacttctctttgtgtcttta 260

                                                                       
Query: 61  agagctgcaggtacttttttctctacttttcctaggagatgtatctgttccagaaaattc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 agagctgcaggtacttttttctctacttttcctaggagatgcatctgttccagaaaattc 320

                                                                       
Query: 121 agccaactggcatctaacaaatttgtcccttcataatcttaggcaattcctgtttcaaac 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 agccaactggcatctaacaaatttgtcccttcctaatcttaggcaattcctgtttcaaac 380

                                                                       
Query: 181 ttagagaagaccctcaggaacttcctaattcaaacttagaaaagacccagtaaaaatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagagaagaccctcaggaacttcctaattcaaacttagaaaagacccagtaaaaatttc 440

                                                                       
Query: 241 tctatcccataatcaagattcacactcccttaaatgaagaatgcccttgtgttagtctaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctattccataatcaagattcacactcccttaaatgaagaatgcccttgtgttagtctaa 500

                                                                       
Query: 301 tctaactccttttagcttatgctatgattcttagatgtaagatattttaaaaagtgccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaactccttttagcttatgctatgattcttagatgtaagatattttaaaaagtgccca 560

                                                                       
Query: 361 gaatcctcaacattccagagcattgacaatcagttgcttgggcacccaatatgagtgctt 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatcctcaacattccatagcattgacaatcagttgcttgggcacccaatatgagtgctt 620

                                                                       
Query: 421 gatttatgttgtacagttgttcactacttctgctcctcctgctgggaatggcctttgcac 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gatttatgttgtacagttgttcactacttctgctccttctgctgggaatggcctttgcac 680

                                                                       
Query: 481 ctttcgtacctcttttattcagagataatatgttttcataattatatactggcaataaag 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttcctacctcttttattcagagataatatgttttcataattatatactggcaataaag 740

                                                                       
Query: 541 ttggatgaggaagagaagagcaatttcctctctctttactgtgcttctgttctgtgtttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttggatgaggaagagaagagcaatttcctctctctttactgtgcttctgttctgtgtttt 800

                                                                  
Query: 601 tctgccagactcaaatcactcgaggaaaagaggctaaattgaaatgaaagaggcc 655
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 tctgccagactcaaatcactcgaggaaaagaggctaaattgaaatgaaggaggcc 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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