BAC Information

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BAC

Clone NameMSMg01-160N17
Chromosome5 (Build37)
Map Location 57,101,065 - 57,101,351
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160N17.T7 (MSMg01no160_n17.b1)MSMg01-160N17.TJ (MSMg01no160_n17.g1)
ACCAG360415AG360416
length703728
length of high quality
(start - end)
313 (52 - 364)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no160_n17.b1 PHD_FILE: MSMg01no160_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:56 2005CHROMAT_FILE: MSMg01no160_n17.g1 PHD_FILE: MSMg01no160_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGAGGATTACCGAATGGCAGAGAAGAACCTGAAA
AAAATGTTCGACATCCTTAATCATCAGGCAAATGCAAATCAAAATAACCC
TGAGATTCTACCTCACACCAGTCAGAATGGCTAAGACGAAAAATTCAGGT
GACAGCAGATGCTGGTGAGGATTTGGAGAAAGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACTGCTCTGGAAATCAGTCTGGCAGTTCC
TCAGAAAATTGGATATAGTACTACAGGATGATCCCGCAATACTTCTCCTG
GGCACATATCCATAAGATTGCCCTTCGGNANACAGGACACATGCTCCACT
ATGTTNATAGCAGNCTTATTTATAACAAAAAANCACCAAAAAGAACCCGG
ATGCCCCTCATCAGAGGAATGGATATACAAAATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAATAATGAATTTATGAAATTCCAAGCA
ACTGGATGGACCTGGAGGTTATCATCCTGAGTGTGGTAACCCTATCACAA
AGGGACTCTCACAATATGTACTCACTGATAAGTGGATATTAACCCAGAAA
CTTTATTTACCCCAGATATACGATACAATTTGTTAAATGGATGAACCTCT
TGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAAATGGTTAAAGTCCAGAGAATGAGAGAA
TATGGAGAGCTCAGACACAAATATACATCTCTATTCATGCCCCGCTAAAG
GTTAAGGCATCATTATGGGAGACGGGCAGAAAGGATAGTAATATCCAAAA
CTCAGGAAACCTGGAATAACCTACTGACTTCTACACATGACAGTACTATC
ACATTCAGGGACTCACATTATCTGGGGTTGTTTTTATAAACTTACATAAG
ATAAATACGGCCACCACTCAAGACAGAATAGGGGGGAATCATGGACCCCA
TCCTTATTTGATGAACCCCGCACAGATAAATATTGTGTTTCCTGGTAGGC
TATTCATACCCCGGCAGATCTATCCAAACAGAGAAGTATACAGATAGCAC
AATTTGGAGCTAATGAGTTATTATCAAATAACACAAAATATTATTTAAAT
GATATTTTACCAATGATGTCAAGAAACCTATAGGATAAGAAATAATCAAT
TTAATTCAATAAAATGAGCAGAGATAACATCAAAGGAGACTAAGATCTCT
ACCAATGGGTGTTTAATAATGTAGTCTAGGAAGAAAATTATATGTAATCT
AAGATATTGACACTTCAAGATGCAAATGACAGGCATTTTAATGATAATAC
CACAAGTGATTGGGTTTACGAACGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_n17.g1 MSMg01no160_n17.g1 CHROMAT_FILE:
MSMg01no160_n17.g1 PHD_FILE: MSMg01no160_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:56 2005
         (288 letters)



>mm_chr5_57100865_57101552
          Length = 688

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaatggttaaagtccagagaatgagagaatatggagagctcagacacaaatatacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acaaatggttaaagtccagagaatgagagaatatggagagctcagacacaaatatacatc 428

                                                                       
Query: 61  tctattcatgccccgctaaaggttaaggcatcattatgggagacgggcagaaaggatagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 427 tctattcatgccccgctaaaggttaaggcatcattatgggagacgggcagaaaagatagt 368

                                                                       
Query: 121 aatatccaaaactcaggaaacctggaataacctactgacttctacacatgacagtactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aatatccaaaactcaggaaacctggaataacctactgacttctacacatgacagtactat 308

                                                                       
Query: 181 cacattcagggactcacattatctggggttgtttttataaacttacataagataaatacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cacattcagggactcacattatctggggttgtttttataaacttacataagataaatacg 248

                                                          
Query: 241 gccaccactcaagacagaataggggggaatcatggaccccatcctta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gccaccactcaagacagaataggggggaatcatggaccccatcctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)