BAC Information

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BAC

Clone NameMSMg01-161J04
Chromosome5 (Build37)
Map Location 87,828,135 - 87,828,456
singlet/doubletsinglet
Overlap geneLOC100039818
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494
Downstream geneUgt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161J04.T7 (MSMg01no161_j04.b1)MSMg01-161J04.TJ (MSMg01no161_j04.g1)
ACCAG360942AG360943
length1,2551,236
length of high quality
(start - end)
322 (80 - 401)379 (72 - 450)
definitionCHROMAT_FILE: MSMg01no161_j04.b1 PHD_FILE: MSMg01no161_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:19 2005CHROMAT_FILE: MSMg01no161_j04.g1 PHD_FILE: MSMg01no161_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCGCGCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGTAAATGAAAAGCAACCTCTTCAAAATCTGTGCAACATGGAAACAA
ACCAAATCTGACCCTGGAGAGAGGAGAGGGGCACTTGGTCCACACCACAC
AGAGCCTTGGACTCTTGACATCTGTTCACTTATAGGAGGAGAAGGGTGCA
GCTCCTGCGAAGTCAACTACTATCTACTGAAGGACCGCATACACAAGAAT
ATTTGGAATGTGCAAATCAGTCTTGAAGTTGTTGGGTTTCTTTCTCTTTT
TTTGAAGGGTACTTAGTTGGGTTGGTAAGGAAGATGATGATTTACAGATT
ATGGTAAGAAGGAATGAATTTTAAGAAGCACGTTATATGAAATTCTAAAG
ATTATTTTTTAAACAAAGAGAAATAGAAATATCAGTTTCTCTTGGTGTGA
TTTTTTTTTTCCCCCCCCCCGCAAGTTGAATCCCCCGCTAAAAAAGAGGA
GGGCATGTTCTGAACCATTAGTCCACAACAATAGCTCTACAAAGGGTGTG
TGTCCATTAAGGTGAAGTTGGCATAGCAGGTTTAATATTTGCATTTAAAT
CCTACCCTGCCACCACTCCAGAGGAAGTTGAAGATGAACGCCAAAAGCAA
TACCCAACTTTATTCAGATAATCAAATAAAAGTATACTCTGAGGGTTAAA
CAAAGATTTTTTTTTTGAGATGAGCTTTTTTTTTCAATTTTTTAATTAGA
TATTTTCTTCATTTACATTTCAAATGCTATTCCTGAAAGTTCCATATACC
CCCCCTGCCCCTGCTCCCCTACCCACCCCACACCCACTTCTTGACCCCGG
GTGTTCCCCTCTACTGGGGTATATAAAGTTTGCCAGACCAAGGGCATCCT
CTCTTTCCAATGAATGGTCAACTTAGGGCCTATCTTTTTGCTTCATTTTG
CATATAGATATCCCAAGCTTCTTGGGGGGATCCTGGCTAACTTCCCTATT
GTTTTTCCCCTCTTATACCATTAGGAAAACCTCTTTTAAAACCTTTGGAC
TTTCTTCTTCACTCCCTCAATCGTGAAGAGTGTTTCTTCTCCTTTTTATT
CCATCTCACTCTCCCCTCTCTTCTTTTATCCCTCTTACCTATCAATATTT
CCCCAATTATAATATTATTTTTCCATGTCCTTCTTTTCTTTACATCTGTC
TTATACCATTCCCATCTCACCTCATCTATTCTCGTCCTTCTTCTCTCCAT
TCCCA
NNNTTATGAGGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATATTCAGCATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACCCCAGTCAGAATGGATAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTAGAATTGCAAGCTTGTACAACCACTCTGAAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCTGCA
ATACCTTTCCTGGGCATATATCCAGAAAATGTCCAAACCCGTAAGAAGGA
TACTTGTTCCACTATGTTCATAGCATCCTTACTTATAATAGCAGAAGCTG
GAATTTTTTTTCCCCCCCCTCAACAGAGGAATGGATACAAAAAAAAAGGA
GGGTTTACACAATGGGTTACTACTCAGCTATGAAAAGGAATGAATTTATG
AAATTCCTAGGTAATGGTTGGGTCTGGAGGGCATCATCCTGAGTGAGGTA
ACACAATCACAAAAGAACTCAAATGATATGTACTCACCGATAAGTGGATA
TTAGCCCAGAAACTTAGTATTCCCGAGATATAAGATACAATTTGCAAAAC
ACATGAAACTCAAGAAGAACAAAGACCAAAGTGTGGACACTTTGCCCCTT
CTTAGAATTGTAAACAATTACCCATGGAAGGAGTTCTGAGACAAAGTTTG
GAGCTGATACAAAAGGATGGATCATCTAGAGACTGCCATATTCAGGAATC
CATCCCATAATTAGCCTTCCAATGATAATACCATTGCATACACTAACAAG
CGTTTTGCTGAAGCACCCTGATATAGCTGTCTCTTGTGAGACTAGGCCAG
GGCCTATCAAAAACAAAATGGATGTTTCCCGTTCGCTTTTGGATGGGTTC
AAGGGCCCCCCTTGGGAGGATTTATAAAAGTTTTCCAGGGAATTTAAAAA
TTCGTTACCTTGGTGTGGCTAAAAATTTTTTATATAACCCCGCTCCCCTG
AGCTTCTGATTCATGTTAAATATTATTAAAAAAAGGCTTACTCCATACCC
TTTTTGTAATAAAAAATCCCTTGTTCGTTTAAAATTTTTTTCTCCTATCT
CGTTAATCTTCATGCACAATGTGTGTAAATGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_j04.b1 MSMg01no161_j04.b1 CHROMAT_FILE:
MSMg01no161_j04.b1 PHD_FILE: MSMg01no161_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:19 2005
         (322 letters)



>mm_chr5_87827935_87828656
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgtgcaacatggaaacaaaccaaatctgaccctggagagaggagaggggcacttggt 60
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 522 atctgtgcaacatggaaacaaaccaaatctgagcatggagagaggagaggggcacttggt 463

                                                                       
Query: 61  ccacaccacacagagccttggactcttgacatctgttcacttataggaggagaagggtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccacaccacacagagccttggactcttgacatctgttcacttataggaggagaagggtgc 403

                                                                       
Query: 121 agctcctgcgaagtcaactactatctactgaaggaccgcatacacaagaatatttggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agctcctgcgaagtcaactactatctactgaaggaccgcatacacaagaatatttggaat 343

                                                                       
Query: 181 gtgcaaatcagtcttgaagttgttgggtttctttctctttttttgaagggtacttagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtgcaaatcagtcttgaagttgttgggtttctttctctttttttgaagggtacttagttg 283

                                                                       
Query: 241 ggttggtaaggaagatgatgatttacagattatggtaagaaggaatgaattttaagaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggttggtaaggaagatgatgatttacagattatggtaagaaggaatgaattttaagaagc 223

                                 
Query: 301 acgttatatgaaattctaaaga 322
           ||||||||||||||||||||||
Sbjct: 222 acgttatatgaaattctaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)