BAC Information

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BAC

Clone NameMSMg01-161P04
Chromosome5 (Build37)
Map Location 83,097,011 - 83,097,427
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161P04.T7 (MSMg01no161_p04.b1)MSMg01-161P04.TJ (MSMg01no161_p04.g1)
ACCAG361218AG361219
length1,2071,222
length of high quality
(start - end)
412 (45 - 456)408 (469 - 876)
definitionCHROMAT_FILE: MSMg01no161_p04.b1 PHD_FILE: MSMg01no161_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:09 2005CHROMAT_FILE: MSMg01no161_p04.g1 PHD_FILE: MSMg01no161_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGAGCAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGATATCATTTAAAATGGCATCATGCAAACACATCTGTAATCCCA
ACACTCCTATTGTCAGATGAAACTCAGAGACCAAAGAATCCCTGGGAATT
TCAGGCAAATTAGCTTTGAATATTCTGAAAAACAAAAACAGTTTCTCACG
AGGTGAATGTAATGGCAAAGATCCATAGAGTGGATTTCCTCCAACCACCC
CACAACTGCCCCCCTCCACACACTGTGACACAGGATCGCATGCTGAGTAT
GAACACACACATATGGGCATATGCACACAAAGACATCAGTTGTATACAAT
AAACACAGAGAGAGACAGAGAGAAAGAGACAGACAGACAGACAGACACAC
ACACACATACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGATTTTTTATACCCCCACAGAGAGAGAGAGAATATCATACAAAAA
AGGGGTCGAAGGATGCCAAATCAATGAAACAAAACTAAGATGCTCTACAA
GAGCAGTACGTACTCTTCACTACTGAGGTTCATTTCCATCACTTAACTAC
TGACATTGAAGACAAATTATAATACAAATAATGGTGAGGCTGATTATTAT
AATGAAATTCTTTGTTAAAGTGCAAATACTTTATACTAGTAAGTTTAAGG
CAATGAGTAAGTGATTATATGTAAGTTATCTTAGAAGGTTTCGACTCTTA
AGATGCACTAGCACATGAGCTACCACAGGCCTAAAATTCAAGAAGATAAA
TATGTATTTGAATAAAGTCCAGTCTAGAAAAAAAAATCCGAGATTAACTT
AACAGATGTGGTGTGATAGCTCCACAATGCCTGTCTCCTGTTGTTCAGGA
AAAATCCCCTAGACTCTCATTCTATAAGGCTGAAATTTCTTTTGGAACCC
CCAACCTATTACGAAGGCCTAAAGAATTCCTGGGAAACCGGTGAACCTCC
CTGTCCCTTTGAAGGCCTTTAAAAATGATATCTCAAATTCTTGAAAAAAG
CCCCCCCAAAAGCATCGTCGAAACTTTTCCCCACACTGAACGCCAATCCC
TCGTAAACCACATTATTCTCCTCCTATACCCTTTATCCCTGCGCCCCCCC
AAGGCGGCACCACCCCTTTTTGTTGTTCTTTCCCCCCAACAAGGGGGGCT
TAAAAAA
NNTTATACACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTATTATGAGGGTCTAAGGAGTAATAACTT
CTTATAAAGTAGGAAAATAATCTAAGTTCATCTGAACAAAATAAAACCCC
TGATCTGAAAAGTCAAACAAGAAACTACTTGCAATAGAAAAGTTTCCTTC
CCACATGTAAAATTAAATCTGATAAAGTATCCCTAAAACAAAAATATCTA
CGCAAGTAAAAATCTTTACAAAACAACTTTTCATTTTTACTAGTAACATC
AGTAGATTAGTGAAATAAAATAGTAAAATTTGGGTCTACAGGATCCTATG
AAGAATTACATATTATATAAATTTAATAAAATTCAATTATCTCTTAAAAG
CCAAATAGAGTATTTATGAGAAATATAGAAAAATGTAAAGAATGTTGTGT
TATTAATACCCCCCCCCAAGGAGAACAAAAATGAATGCTAAAAGAGTAGT
TATTTATTTTTTTATTACATATTTTCCTCAGTTACATTTCCAATGCTATC
CCAAAAGTCCCCCATACCCTCTCCCCTACTTCCCTACCCACCCATTCCCA
TTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGT
CCAAAGGGCCTCTCCAGTGATGGCCGTCTAGGCCATCTTTTGATAAATAT
GCAGCTAGAGTCAAGAACTACGGGGTACTGGTTAGTTCATATTGTTGTTC
CACCTATAGGGTTGCAGATCTATTTAGCTCCTTGGATACTTTCTCTAGCT
CCTACATTGGGGACCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCA
CTTCTGTGTTTGCTAGGCCCCGGCCTAGTCTCACAAGAGACAGCTATATC
AGGGTCATTTCAGCAAACACTTGCTAGTGAATGCAATGGTGTCACCGTTT
GGAGGCTAAATTTGGGATGGATTCCTGGATATGGCAGCCTCTTAGTGGGC
CATCCCTTTTGTTTCACCTCCCAACGAAGAATTATTTAAAAGCTGGAAAA
GGGACAAAAAAAAAATCACTTTCGTTTCCATGGGACAGCTGGGGAGTTTC
CCGTAAACTGTTCCCCCTAAAAAAAAACTTATAAAGAACTGGAGCTTGGT
TTTAAAAAAAAAACTCCCGCTTACTTTTAAAGAAAAACAACCTAAGGAAA
TTACGGGCATTGTTAAGGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_p04.b1 MSMg01no161_p04.b1 CHROMAT_FILE:
MSMg01no161_p04.b1 PHD_FILE: MSMg01no161_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:09 2005
         (412 letters)



>mm_chr5_83096807_83097621
          Length = 815

 Score =  729 bits (377), Expect = 0.0
 Identities = 404/417 (96%), Gaps = 9/417 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagatatcatttaaaatggcatcatgcaaacacatctgtaatcccaacactcct 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagatatcatttaaaatgggatcatgcaaacacatctgtaatcccaacactcct 264

                                                                       
Query: 65  attgtcagatgaaactcagagaccaaagaatccctgggaatttcaggcaaattagctttg 124
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgtcagatgcaactcagagacaaaagaatccctgggaatttcaggcaaattagctttg 324

                                                                       
Query: 125 aatattctgaaaaacaaaaacagtttctcacgaggtgaatgtaatggcaaagatccatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatattctgaaaaacaaaaacagtttctcacgaggtgaatgtaatggcaaagatccatag 384

                                                                       
Query: 185 agtggatttcctccaaccaccccacaactgcccccctccacacactgtgacacaggatcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtggatttcctccaaccaccccacaactgcccccctccacacactgtgacacaggatcg 444

                                                                       
Query: 245 catgc-tgagtatgaacacacacatatgggcatatgcacacaaagacatcagttgtatac 303
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgcctgagtatgaacacacacatatgggcatatgcacacaaagacatcagttgtatac 504

                                                                       
Query: 304 aataaacaca--gagagagacagagagaaagagacagacagacagacagaca------ca 355
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||      ||
Sbjct: 505 aataaacacacagagagagacagagagaaagagacagacagacagacagacagacagaca 564

                                                                    
Query: 356 cacacacatacacacacacacagagagagagagagagagagagagagagagagagag 412
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacacacacacacacacacacagagagagagagagagagagagagagagagagagag 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 815
Length adjustment: 9
Effective length of query: 403
Effective length of database: 806
Effective search space:   324818
Effective search space used:   324818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)