NNGTACTATGGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCTTTAAATTGAGTCAATTTCCTGATCATTATCAATTAAGCTTGCATGC
TTCGGAGTGTTTCCCAGTCTACCTCCTCAAGCTTGGTCAATTTTTAATAT
GATCCCTTTCTACTTGATATTGATTTTTCCATAACATCAGCTCAGTCGAG
TCTGTGATAGCATTATACCTGAAATGCCCTTTAAGTGATTATGGTCTTCA
AAATTCCAAAGACTTTATGCTTGTCCCATTAAATTGTAGAATTTATTTTA
AATACTCTGCAGTTCATTAAAAGGGAATTCATTATAAACTAAGAAGAAAG
TGAGGAAAGATATGGGTGTCTACTAAACATTTACTAAATTCACAATACCT
CTAAAACTGATTACTATAGTAAAAAAGGTCTTAATTTTAAAATTATATTT
TTTTTTCCCCCCCCCCCTTTTATACAATTTCAAAAGAAAACAAAACTTGC
TTCTCTTTTTGTTTTCATCCATTTTTGGAACAACTTATTTATTTGCTCAA
TACAATTATTTTAAAAGAGTACTTGAATTATACCCAATCTGCTAAAATAG
GACCTCAGTACAAGACATAGTACTGGGGATGAAGGGAGAAACATGTCATT
ATAAATGGTACCATACTCCTGGCAAATGTAGAAGGTGTCCCTGAAGAACT
ATTAGGACTATTAGTAATAACTGAAGGCAGTAAGCTGTTCAAACACAAAA
TAAATATACAAAAAATCAATAGCCTCCTTATACAACAGAAAAAGAATTCA
GAGAAGATAATGAAAAGAACATTCACAAAGTCATCTTTCTTATGATGCTC
AAACAGTACAAGTTTCCCTTGCAGAGAGTGAGCAGTCTATTCTTCAAACA
CCAGGAGAGGTATTGAGTACCCATCTTTAAACCCCAAAATTTTTAACTCA
ATTTCCATAACTCTCCTACAAGCTAATTAATCTTGGAGAAGCTAAATAAA
CCTATTGCCCAAAATGGCTCCTATTTTAAAAAACAACAACTTGGGGTTTG
GGGGATTTTTACCTCAAACTTTTTTCCAGTTTGGAATTTCTACCCTCTGA
AAGCTTTACTATCAAAAAATGTTGGTTTTAGGCCCACCCGGGTTTTATTT
TTTAAAACTCTTCTCCTCCTTCTTTCTTTATTATTTTTACTATTTCTTGC
TAGAATACTTCCTGTCGTTTTG

NNAAAGACATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATGATCTGAGACCATGAGGAAAAAACATC
TTTTCAAGGAAAAAAAAAAAAAAAAGAAGAAGAAGAAGGCAAGGCAAGGG
AGGGAGGGAGGAGGAGGCAGAGGAGGAAAGGAACTTTCCAACTTTGAGAG
TCAGAACATAGCAAGAGAATCACCAATTTTGCAGAAGGTGTCTTGATTCT
TCCTGTGCTAAAAGGTACACCCTGTTACAACAGCAGCAGCTGCTCTAGCA
GAGCCTTCTTCCCACTTGGGTAATTATTTTTGTGAAAACAAAATAGCAAC
AGCAGCAACAACAAACAAAAAGAAACAAAAAGGAGCGCAGGGGAGAAGAG
ATTATGAACAGGAAAAAGAGAAAAGGAAAGAAATGATGCCCTGGTGGTCT
AATTTTTTTTCCCCCCCCCCCCCATTTTCCTCAATTTGAGGAAAAAAAAG
GGTCAGTCAAATTTGCTGAAGAGTCTATTTGTATCTTTTAGAAAAGATTT
GTTGACATAAAAACAGAATCTTTGTCTTCATTAAAAATATGGTCCTGACA
ACTGTTCATGGTGATGAAAAGAATTTGGATATTCAAAGAAAGTTCTTTCT
TTCTCCTTTTCAGGCACTGAGAAAAAGGGTAAAATCCCTCTAAGGGAGAA
AGAGTCATTGTATGACTTGGTGCTAGATTATCAGCCTTTGACTCCCAATT
CTGAATTTTCAAATGTCTGAAAAGAGTGGTGTAAGGTAAGACAGACAGGT
CAGTTTGTCAAGATTATTTGAGAGTGAACAGGCCAGACTACAGATGGTTC
TGAATGCTTCCCTGTCCAGTCCTGTGACGCGTTCAGCAAACTTTATAACC
TTTAGGCTGGCATCTTTGCAAAGACTGAAATTGGGAACAACCACAAATTT
GCCCTAATTGCTATAATTTGGCCACCCTCCCCCCGACAAAAGTTGAACTC
CCAAATTTCAAGGGGTTTCTGAAAACCATTCTCCCCCCCCATTAACCAGG
TTAACGGTGGTTCCCTATTAATGGGCCACCTTTACGTTTCTAAAACGAAA
GGGGTTGGGATTTTTTTAATTTTTAAAAATTCCTGTTCTTGGCTTCTCCC
CCCTCTCCCTTCTTTGGTACCCCCCTTCCCTACCTAATATAA

Query= MSMg01no161_p21.b1 MSMg01no161_p21.b1 CHROMAT_FILE:
MSMg01no161_p21.b1 PHD_FILE: MSMg01no161_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:15 2005
         (413 letters)



>mm_chr5_46930100_46930912
          Length = 813

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacctttaaattgagtcaatttcctgatcattatcaattaagcttgcatgcttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 590 ggaattcacctttaaattgagtcaatttcctgatcattatcaattaagcttgcatgcctc 531

                                                                       
Query: 64  ggagtgtttcccagtctacctcctcaagcttggtcaatttttaatatgatccctttctac 123
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggagtgtttcccagtccaccttctcaagcttggtcaatttttaatatgatccctttctac 471

                                                                       
Query: 124 ttgatattgatttttccataacatcagctcagtcgagtctgtgatagcattatacctgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttgatattgatttttccataacatcagctcagtcgagtctgtgatagcattatacctgaa 411

                                                                       
Query: 184 atgccctttaagtgattatggtcttcaaaattccaaagactttatgcttgtcccattaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atgccctttaagtgattatggtcttcaaaattccaaagactttatgcttgtcccattaaa 351

                                                                       
Query: 244 ttgtagaatttattttaaatactctgcagttcattaaaagggaattcattataaactaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgtagaatttattttaaatactctgcagttcattaaaagggaattcattataaactaag 291

                                                                       
Query: 304 aagaaagtgaggaaagatatgggtgtctactaaacatttactaaattcacaatacctcta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aagaaagtgaggaaagatatgggtgtctactaaacatttactaaattcacaatacctcta 231

                                                           
Query: 364 aaactgattactatagtaaaaaaggtcttaattttaaaattatatttt 411
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aaactgattactatagtaaaaaaggtcttaattttaaaattatatttt 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no161_p21.g1 MSMg01no161_p21.g1 CHROMAT_FILE:
MSMg01no161_p21.g1 PHD_FILE: MSMg01no161_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:15 2005
         (381 letters)



>mm_chr5_46746031_46746811
          Length = 781

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgatctgagaccatgaggaaaaaacatcttttcaaggaaaaaaaaaaaaaaaagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgatctgagaccatgaggaaaaaacatcttttcaaggaaaaaaaaaaaaaaaagaaga 260

                                                                       
Query: 61  agaagaaggcaaggcaagggagggagggaggaggaggcagaggaggaaaggaactttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagaaggcaaggcaagggagggagggaggaggaggcagaggaggaaaggaactttcca 320

                                                                       
Query: 121 actttgagagtcagaacatagcaagagaatcaccaattttgcagaaggtgtcttgattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttgagagtcagaacatagcaagagaatcaccaattttgcagaaggtgtcttgattct 380

                                                                       
Query: 181 tcctgtgctaaaaggtacaccctgttacaacagcagcagctgctctagcagagccttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgtgctaaaaggtacaccctgttacaacagcagcagctgctctagcagagccttctt 440

                                                                       
Query: 241 cccacttgggtaattatttttgtgaaaacaaaatagcaacagcagcaacaacaaacaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccacttgggtaattatttttgtgaaaacaaaatagcaacagcagcaacaacaaacaaaa 500

                                                                       
Query: 301 agaaacaaaaaggagcgcaggggagaagagattatgaacaggaaaaagagaaaaggaaag 360
           |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||
Sbjct: 501 agaaacaaaaaggagcgcaggggagaagagaaaaagaacaggaaaaagagaaaaggaaag 560

                                
Query: 361 aaatgatgccctggtggtcta 381
           |||||||||||||||||||||
Sbjct: 561 aaatgatgccctggtggtcta 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)