BAC Information

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BAC

Clone NameMSMg01-162L21
Chromosome5 (Build37)
Map Location 52,498,535 - 52,498,642
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162L21.T7 (MSMg01no162_l21.b1)MSMg01-162L21.TJ (MSMg01no162_l21.g1)
ACCAG361771AG361772
length725718
length of high quality
(start - end)
54 (129 - 182)109 (74 - 182)
definitionCHROMAT_FILE: MSMg01no162_l21.b1 PHD_FILE: MSMg01no162_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:11 2005CHROMAT_FILE: MSMg01no162_l21.g1 PHD_FILE: MSMg01no162_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGGAGAATGCCCGAAATGAAGACATAAGTGAATTTGAGGAGGA
AATGGCTAGAGCATCTATGATAGCTCCCTTAGGCTCCTCTGAGTACCAAA
GAAGAAAGGGGTTAGTATGACAGCCACAGGAGACCAGCCGGAGATGGCGA
GCATCCTCAGAGAAGAGGAGAAGTCGGAAAAGAACGCAGGGGCCCAAATC
CCAAGGAGGACACAGATCCAGGAAGATATGACAGATACGTCTGCACCAAG
ATATCTCAAGAAACTTAGCTTCCACCAAAGATTGTCAGGGGAGATAGTCC
AGGGTCTAACTGCAGCATGTTGGTGAACCCCCGAACACCACATTCTAATC
TCCAAACGGGAAATAACCACTCAACAGACACTTCCAGCACTGGAAGAGGC
GACTGTTGCAAGCTGTTTGGAATGACCAGATTATGCCGATCATGATCCCT
TCTAAGAAAAGGGGAGTATGAAGAGATAACAAGTCAGGAAAGCTGTCCAC
TGCTCTATGGAGAAAGACAGTTAGAAAAAAATGGTACCCTGAAATCTGAT
GCTCCAGCTCCTCAGCACACTCTGCAAAGAAGGTGCAAAGATGTAACCTG
TCGTGAGTGCCGGACAAACTTCCCAGGATGATCTTCTCGGCCGGTGGGAC
TATCAATCAACACAAGGGCAAAGCN
CAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTGACAATTTGGTAATTGTTCCCAC
CCAGTTGGCTGTAGTGCTCCCTCTCCTGAGATGGAACTGGCAGGGGATGA
CTGCATTTCATAAGCTGCTTTGTGCCTCGTTATTTCATGGTACACCCCGA
ATATATACTTCCTTTTACTTTCATTCAGGAAGGAAAACAATGAATTGTGT
CACCAAGCTTTGGTGACAGATGACTATTGAAGGAATAAATGGTGACAGGG
GAATTAACAGGTTGCAGAAGGGGATGGAGGAGATGATGCCAAAGAAAAAG
GGTGAGAATGATTATTTTTTGTACAACGCCCCCCCGAAGGGACATGTCGC
AAACAATGGTAATAGGGTAGAAGGAAAAAGGGAAAAAACAAGGAAAAAAA
AAAGGGTAAATGAAAATGAATGGAACTAAAAATGTGAAAAGGGGAAAGCG
GGATCCAGGAAGAGAGATTCAATGGGGAAAGAGGGAAAACAGGGAAAAAA
AAAAGGGAACAAAAGGTACCAAGGCAGCAGCAAAGGGAAAGAGGGAACAA
AAGGGATAAAAAGGGAAAAAGGGGGAAAAAGGGGGAAAAAATGGGGAAAA
AGGGCCAACTCTGGGTTGGGGAGCCTGCTATGAAGGATAATGTGGTGCAA
TGACACAATGGGTAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_l21.g1 MSMg01no162_l21.g1 CHROMAT_FILE:
MSMg01no162_l21.g1 PHD_FILE: MSMg01no162_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:11 2005
         (109 letters)



>mm_chr5_52498335_52498843
          Length = 509

 Score =  186 bits (96), Expect = 4e-52
 Identities = 105/108 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgacaatttggtaattgttcccacccagttggctgtagtgctccctctcctgagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 308 cattgacaatttggtaattgttcccacccagttggctgtagtgctccctctgctgagatg 249

                                                           
Query: 61  gaactggcaggggatgactgcatttcataagctgctttgtgcctcgtt 108
           |||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 248 gaactggcaggggatgtctgcgtttcataagctgctttgtgcctcgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)