BAC Information

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BAC

Clone NameMSMg01-162M22
Chromosome5 (Build37)
Map Location 119,515,669 - 119,515,946
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2, LOC100039488
Downstream geneEG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162M22.T7 (MSMg01no162_m22.b1)MSMg01-162M22.TJ (MSMg01no162_m22.g1)
ACCAG361817AG361818
length721693
length of high quality
(start - end)
134 (50 - 183)279 (79 - 357)
definitionCHROMAT_FILE: MSMg01no162_m22.b1 PHD_FILE: MSMg01no162_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:16 2005CHROMAT_FILE: MSMg01no162_m22.g1 PHD_FILE: MSMg01no162_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCAGCATGGACTATATAGTGAAGCCCTGGAGAGGGAA
GAGAAGAGACAGATAAATGATGGAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGCTCCNTCCCNCCGCGCACT
ACGATTTCACAGCCCCATGCATTCGGATGCCAGGTTGAAATATCTTTTTT
TTTTTATGCATGCTGTGGTGGTGTTTTGGATTTCTTTTGCCCCGCGCCCC
CCGAAGACCAGAACTTTTTTTTTTTTTGACGAAGAAGAGCAAGAGAAGGA
AGAATTTTGGGTGGGCTCAAAAAACAAAGACCCCTTTTTGTTTTTTTTTT
TGTTGTGGGTGGGGGGGCCCAACAAAAAAAATAATAGCGGGGGGGGGGGG
GGTGTTTTTTTAATCCACGCCTATTGTTATTAGTTTCCCTAATTTATGCG
ATTTTTATATTGTATTTTCGTAGTTAACAATTTTTTATTATTCCTACTTG
TCTTTGGGGTCCGTTTTTATATCTGTTTACACAGAATTTGATATATCTAA
TTATTTTATATACGGCCTGTTTTTTTTTACCTCTTTCTTTTTATATTATT
TATGTTGGGGCGCTTTTTTTTTCGACTTTTCCTTTTTTCTCTTTTTTTTC
TTTTTGCTCGTTTTTATGGCG
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTCATTATAAGAATGCTT
CGTTACCCTCTTTTCCTGTGTACAAAGCCCTGCGATGAACACTTCAATGT
CTTAGGCCATCAGGACTTCCCAGATAAAGCATCTCCTTCCTCTACTGCAC
ATGTGGGGAAACTAAGGCAGAGAGCTCTGTGTGGGCTTCATCCTAGCCCA
TAGCAGGCATGTAATTCACCCATGACGCCTCTGGGGCAAGTGCTGTTTTA
CCCCCATTTTACAGATACTATTAAAGAAAAACTGAGGACAGAATACTAGC
TGTGAGGTTGTTTTTGTGCCCNGGCGAACCACTGGCCAACAGCTACAGAG
GTATATACTCAGGAACCCACCCCGACAAATGCATATCATGTGAGGTACCT
AGCAAAAGGGATCTGGGCGCTTTCCTCACAGAAGTAAAATAAAAAGTAAA
ATAAAATAAAAATGTTTTGGTTAAACTAAACATTCCCAGTTGATCATCCA
ATGTGACCCGTCTACAGATAACATGTGTCACCTCATGGAAAGAATTACAG
ATAACGTGTCTAACAATTATTTTGAGGCTTGGTAGAGGGGCCTGGGAAAG
GTACCTCAAACGTATGCAGGATGTTAAATGAAAGGTATTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_m22.g1 MSMg01no162_m22.g1 CHROMAT_FILE:
MSMg01no162_m22.g1 PHD_FILE: MSMg01no162_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:16 2005
         (279 letters)



>mm_chr5_119515469_119516147
          Length = 679

 Score =  447 bits (231), Expect = e-130
 Identities = 267/279 (95%), Gaps = 1/279 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttcattataagaatgcttcgttaccctcttttcctgtgtacaaagccctgcgatga 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 201 tcctttcattataagaatgcttcgttactctcttttcctgtgtacaaagccctgcaatga 260

                                                                       
Query: 61  acacttcaatgtcttaggccatcaggacttcccagataaagcatctccttcctctactgc 120
           |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 261 acacttcaatatcttaggccatcgggacttcccagataaagcatctccttcctccactgc 320

                                                                       
Query: 121 acatgtggggaaactaaggcagagagctctgtgtgggcttcatcctagcccatagcaggc 180
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 321 acatgtggggaaactaaggcagagagctctgtgttggcttcatcctagcccatagcgggc 380

                                                                       
Query: 181 atgtaattcacccatgacgcctctggggcaagtgctgttttacccccattttacagatac 240
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 381 atgtaattcacccatgacgcctctgggacaagtgctgttttatccccattttacagatac 440

                                                  
Query: 241 tattaaagaaaaactgaggacagaatactagctgtgagg 279
           ||  ||||||||||||||||||||| |||||||||||||
Sbjct: 441 tag-aaagaaaaactgaggacagaacactagctgtgagg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)