Query= MSMg01no162_o08.b1 MSMg01no162_o08.b1 CHROMAT_FILE:
MSMg01no162_o08.b1 PHD_FILE: MSMg01no162_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:22 2005
(304 letters)
>mm_chr5_8421163_8421866
Length = 704
Score = 565 bits (292), Expect = e-165
Identities = 298/300 (99%)
Strand = Plus / Minus
Query: 5 gaattcctgcttcgtacacggaacaggagtaaatagtaactattttctgctgattcagct 64
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 gaattcctgcttcatacacggaacaggagtaaataataactattttctgctgattcagct 445
Query: 65 cttgttctccagtatagagttttgtggaaaccatacaggacagtttgccttcatcctaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttgttctccagtatagagttttgtggaaaccatacaggacagtttgccttcatcctaag 385
Query: 125 tggtaatattagggaaaacatttagattctaatgacttaatttgttatgactagtaatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggtaatattagggaaaacatttagattctaatgacttaatttgttatgactagtaatgt 325
Query: 185 ttcctttctgcaataaagctgttgaacattttttgtaaaataaattaaaaatttgtctgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcctttctgcaataaagctgttgaacattttttgtaaaataaattaaaaatttgtctgc 265
Query: 245 ataaaatgttgcctgattcttttgtaatcacaggtggcatccaagacagaaatgaaaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataaaatgttgcctgattcttttgtaatcacaggtggcatccaagacagaaatgaaaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_o08.g1 MSMg01no162_o08.g1 CHROMAT_FILE:
MSMg01no162_o08.g1 PHD_FILE: MSMg01no162_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:22 2005
(278 letters)
>mm_chr5_8249483_8250164
Length = 682
Score = 501 bits (259), Expect = e-146
Identities = 273/279 (97%), Gaps = 4/279 (1%)
Strand = Plus / Plus
Query: 1 acacatggctatccaccgaatccatcccttagctgcaacttttgtttttgttattttctt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacatggctatccacagaatccatcccttagctgcaacttttgtttttgttattttctt 260
Query: 61 catcatcttgttctcagaaggagcactccacagtttcttgagtaggg-ctatataacttt 119
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 catcatcttgttctcagaagtagcactccacagtttcttgagtaggggctatataacttt 320
Query: 120 gctaatgggggtctggtggtagagagagaatatgtctgtttctcattttcagttgagcaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctaatgggggtctggtggtagagagagaatatgtctgtttctcattttcagttgagcaa 380
Query: 180 tttttcctcattccactaaaacttaccctcttttttttttttttt---atcccatgcatc 236
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tttttcctcattccactaaaacttaccctcttttttttttttttttttatcccatgcatc 440
Query: 237 agactatactatcacgcatcctgtagtctctggtttcca 275
|||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactatactatcacgcatcctgtagtctctggtttcca 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 682
Length adjustment: 9
Effective length of query: 269
Effective length of database: 673
Effective search space: 181037
Effective search space used: 181037
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
