Query= MSMg01no163_c05.b1 MSMg01no163_c05.b1 CHROMAT_FILE:
MSMg01no163_c05.b1 PHD_FILE: MSMg01no163_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:40 2005
(317 letters)
>mm_chr5_96832094_96832810
Length = 717
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%)
Strand = Plus / Minus
Query: 5 gaattctcaaagagaaacaagtaaattaaatgtcccaaacaagacttcctgtatggatgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctcaaagagaaacaagtaaattaaatgtcccaaacaagacttcctgtatggatgt 457
Query: 65 aagagggaagtctagtttacaggcaccatggggtattcattgacaatgaggaaggagaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aagagggaagtctagtttacaggcaccatggggtattcattgacaatgaggaaggagaga 397
Query: 125 cttgacttcttcccagtatcctgaaacccctttattgcacatttccaagagccaggagga 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 396 cttgacttcttcccagtatcctgaaacccctttattgcacatttccaagagccaggggga 337
Query: 185 agaggcagagctatgttagcagcaaggctggaaccgatgagagcaccatcagctaataat 244
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 336 agaggcagagctatgttagcagcaaggctggaactgatgagagcgccatcagctaataat 277
Query: 245 ccactgctcctacacactaagtgtatggctttaacctactcttctctgccctcaccatgg 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 276 ccactgctcctacacactaagtgaatggctttaacctactcttctctgccctcaccatgg 217
Query: 305 gaaaacgctttg 316
||||||||||||
Sbjct: 216 gaaaacgctttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_c05.g1 MSMg01no163_c05.g1 CHROMAT_FILE:
MSMg01no163_c05.g1 PHD_FILE: MSMg01no163_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:40 2005
(482 letters)
>mm_chr5_96656850_96657732
Length = 883
Score = 864 bits (447), Expect = 0.0
Identities = 474/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 1 attcaggtccccaggaagagcaaccagttctcttaattgctgagccatctctcaaccata 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcaggtcccctggaagagcaaccagttctcttaattgctgagccatctctcaaccata 260
Query: 61 tacattcatttttctatatttgcacatggtcactaaggttatatgtcgccaaaacagtta 120
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 261 tacattcatttttctatatttgcacatggtcactagggttatatgttgccaaaacagtta 320
Query: 121 gtaggctttataaaaagcggaaacactttgtactctgttcagtttcaaatctaagaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggctttataaaaagcggaaacactttgtactctgttcagtttcaaatctaagaaaaa 380
Query: 181 gccaccgaagctcttaatcatcaattacgtcattctttgatttgtttatagtttactgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaccgaagctcttaatcatcaattacgtcattctttgatttgtttatagtttactgtt 440
Query: 241 tttatggaggttttgtgagtaaaacatacaggccaatattactcaggttttgaatgtgac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatggaggttttgtgagtaaaacatacaggccaatattactcaggttttgaatgtgaa 500
Query: 301 atttaaaatgaaatccaaatattagtacacgcaaatgttccatccacgtttttaaaccaa 360
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 501 atttaaaatgaaatccaaatattagtacacgcaaatgttccattcatgtttttaaaccaa 560
Query: 361 ctgtgttttt-ctttctgggagtgaaagtatcataacttggcatttaatcttcatagtgt 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtgttttttctttctgggagtgaaagtatcataacttggcatttaatcttcatagtgt 620
Query: 420 ggtatttcctctgaacattgactccccgtccacttgagggacttagcatggccactgagg 479
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtatttcctctgaacatttattccccgtccacttgagggacttagcatggccactgagg 680
Query: 480 agt 482
|||
Sbjct: 681 agt 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
