BAC Information

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BAC

Clone NameMSMg01-163L08
Chromosome5 (Build37)
Map Location 113,043,400 - 113,043,679
singlet/doubletsinglet
Overlap genenone
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
Downstream geneMyo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163L08.T7 (MSMg01no163_l08.b1)MSMg01-163L08.TJ (MSMg01no163_l08.g1)
ACCAG362427AG362428
length737736
length of high quality
(start - end)
314 (51 - 364)280 (80 - 359)
definitionCHROMAT_FILE: MSMg01no163_l08.b1 PHD_FILE: MSMg01no163_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:21 2005CHROMAT_FILE: MSMg01no163_l08.g1 PHD_FILE: MSMg01no163_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGAGCGATGGCACAGACTACGTCTTTAACTAGATCATTA
AAAAAAAAAAATTCCCCAAACTAAGGAAAGATACTTCCACCCAGACACAA
GAAACACACAGACCATCAAAGAGATGGAACCAGAAAAGAAACTCTCCTCA
GCATAGCAGTAAAATATAAAACAGAGAGAGGGTACTGGAAACTGCAAGAG
AGAAATCACAAGTCACATATAAAAGAACACCCAGAATAACAGCTGATTCC
CCAATGAGAACCTTAAAAGTCAGAATGGAGCCGGGCATGGTGGTGCACGC
CTTTAATCCCAGCTTTTTGGACGCCCACCCCCCGCGGATTTCTGAGTTCA
AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTATACAG
AGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAGGAATAGG
AGAAAAGTCAGAATGGCCTGGTATGCCAAGTTCTGAAAGATCACAGATGC
CAACCTAGGCTACCATACCTAGGAAAGCCATTTGACATAGTTGAAGGAGA
AAAGAAAGGAAATGCTTTCCAATATGATATGAACAGGCTAAAATAATTCA
TGTCCACTAAAGCAACTTTACAGTGAATGATAGAAGTGATACTTTGGACC
TAGCAGGGAAATAAGCATAGCCAAGACAGTATAGAGA
NCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGGAAGATGGGACAGTGT
CCATCAAAGAGTAGGAACTCAATAAATATCCAGATCCTTCCTATTAGCTT
CACCACCATCAGCATCAGCATCACCAACATCAGCATCACCATCAGCATTG
CTCCTAAAGACCCCTTGAGCTGAGATCTTGCTACGGAGGATCTCTCATGT
TGCTCCCCACAGAGGTAACAGGAGCCAGGAAGGCTAAGGAAGATTCTAGA
AGAAGATGCTAAAGGGGGTGCTTACAGAGGCTCTTCTGGAGCCAGCAGGG
AGCAGGGAGAGTTATGATTGCCNTTCCCTTACCGTTTCTATAGCTGTGAT
GAACACCATGACCAAAGGCAACAGAAAAAAAAAAAGGAAGGGGTCAATTT
GGCTCACCCTTCCATATTGATCTCTCCGCCTAAGGAAGTCAGGACAGGAA
CTCATACAGGACAGGAACCTGGAGGCAGGAGCTGATGCAGAGGCCATGGA
AGGTGCTGCTTACTGGCTTGCTCCCCATGGCTTGCTCAGCCTGCTTTCTT
ACAGAACCCAGGACCACCAGCCCAGGGATGGTCCCGCCCCATAGGGCCAA
TCCCGGCTTCTTAGAGTAGGGTCCTCCATTTAGGACCCCACTTTTGCTGC
CCAGTCACCTACTTCAGTCTTCCTAACGTCCACCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_l08.g1 MSMg01no163_l08.g1 CHROMAT_FILE:
MSMg01no163_l08.g1 PHD_FILE: MSMg01no163_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:21 2005
         (280 letters)



>mm_chr5_113043081_113043760
          Length = 680

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatggaagatgggacagtgtccatcaaagagtaggaactcaataaatatccagatcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctatggaagatgggacagtgtccatcaaagagtaggaactcaataaatatccagatcctt 540

                                                                       
Query: 61  cctattagcttcaccaccatcagcatcagcatcaccaacatcagcatcaccatcagcatt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cctattagcttcgccaccatcagcatcagcatcaccaacatcagcatcaccatcagcatt 480

                                                                       
Query: 121 gctcctaaagaccccttgagctgagatcttgctacggaggatctctcatgttgctcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gctcctaaagaccccttgagctgagatcttgctacggaggatctctcatgttgctcccca 420

                                                                       
Query: 181 cagaggtaacaggagccaggaaggctaaggaagattctagaagaagatgctaaagggggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 419 cagaggtaacaggagccaggaaggctaaggaagattctagaagaagatgctaaagggtgt 360

                                                   
Query: 241 gcttacagaggctcttctggagccagcagggagcagggag 280
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 359 gcttacagaggctcttctggagccagcagtgagcagggag 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)