BAC Information

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BAC

Clone NameMSMg01-163M08
Chromosome5 (Build37)
Map Location 119,153,083 - 119,153,362
singlet/doubletsinglet
Overlap geneThrap2
Upstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162
Downstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163M08.T7 (MSMg01no163_m08.b1)MSMg01-163M08.TJ (MSMg01no163_m08.g1)
ACCAG362471AG362472
length712708
length of high quality
(start - end)
312 (51 - 362)280 (81 - 360)
definitionCHROMAT_FILE: MSMg01no163_m08.b1 PHD_FILE: MSMg01no163_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:26 2005CHROMAT_FILE: MSMg01no163_m08.g1 PHD_FILE: MSMg01no163_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAATGAGCTTTTGCCTAGAGTTCTGAAAAGTCTGATTCTG
TAATCACACATTTACTGGAATTTATGGCTATTGTGGGGATATCTGTACAA
ATTGAGGTTGACAATGCTCAAGCATATAAATTCTAGTAAATGAAGCAGAT
TTTTACATATTATACTATAAAGCATATTATTGGCATATCTCACAATCCTA
TAGGATAAGTAGCTGTAGAGAGTTATAATTGTACATTAAATGAGATGCTT
AACAAACAAAGAGGGGTAATATAGACCCTCAAAGAGATAGATTACAAAGT
GTGATGTTGTTTTTTAACTTCCTTAACGNTTCCCCCCATAAAGCTACAGT
TGCTGAGAGACATTGGTGCACCACCAAACATAAATACTTTGTAAAATCGG
TTTGTGTCAAATGATGTTTTGCTGGAGCTGACACTTGAAAGGATGTTTTC
CTGAACCAGACACAGGTGAACAAATGTTTTCCTAAAGCAGACACACGTGA
TAGGATGTTTTGCTGGACCACTGCACGAGCGATGCACTATAAATATGACC
CCATACACTGGAAAAGTTATCCCTGGCCCGGATTGCTCTGCTTACCTATT
CTTTGCTTATGACTTGCATCTTTTTGGTCACCTTACTAAGAAATGCTGAG
TTCACCTTGTGC
NAAACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCTCCACTCTTCCACCA
CCTAAGCTAAGCAACACCCTTGAGGCAGCAGGAAACTCTGAGAGAATTTA
AGGATGGTAAGGGTGACTGGAGCAGCAGACTGGCCCAGGAAGTACAACTC
ATGCCAGCACGGACAGCTCTTCGAGTGACAAGGCATTAATAAATAAATCA
GAAAGCAGATTTCAAAATATCCAGAAAGCCTTTTCTTTAAGTAAAGGCCC
ACATCTGAGATCTCTCACAGCAGTTATCTGGAAGGCGAGGAAGTGCCTAA
GTTGCACACAGTTTTTTTTCCACCAGCGACCCCCTCTTAAAATCTGTGTG
TTTACACTATTTTAGGACCCACCACAAAAGAAAGACACACTAGCATTCCT
GTGTTGTTCCCAAGGTAAGGATCCTAGTATCGGCCCCTCGTGATTACTGA
CTACAAAGGAAGCATGCCTGCCACAGTGACAGCTGTACATCAGCAGAACA
GAAATGACCAGCTTGCCCTTTGCTGCGACACCTATAGCAAGCCTCGGTTT
TCCACCCAGGATTGGTACTTTGTACCAAGGCAGCTGATTGTAGGGCTGTG
CCATTAATGTGCTTTCCCGCACAGTACTTATAGTACCCGGTCATCAGAGG
TACACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_m08.g1 MSMg01no163_m08.g1 CHROMAT_FILE:
MSMg01no163_m08.g1 PHD_FILE: MSMg01no163_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:26 2005
         (280 letters)



>mm_chr5_119152883_119153562
          Length = 680

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcctccactcttccaccacctaagctaagcaacacccttgaggcagcaggaaactctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctgcctccactcttccaccacctaagctaagcaacacccttgaggcagcaggaaactctg 421

                                                                       
Query: 61  agagaatttaaggatggtaagggtgactggagcagcagactggcccaggaagtacaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agagaatttaaggatggtaagggtgactggagcagcagactggcccaggaagtacaactc 361

                                                                       
Query: 121 atgccagcacggacagctcttcgagtgacaaggcattaataaataaatcagaaagcagat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 360 atgccagcacggacagctcttcgagtgacaaggtattaataaataaatcagaaagcagat 301

                                                                       
Query: 181 ttcaaaatatccagaaagccttttctttaagtaaaggcccacatctgagatctctcacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttcaaaatatccagaaagccttttctttaagtaaaggcccacatctgagatctctcacag 241

                                                   
Query: 241 cagttatctggaaggcgaggaagtgcctaagttgcacaca 280
           |||||| |||||||||||||||||||||||||||||||||
Sbjct: 240 cagttagctggaaggcgaggaagtgcctaagttgcacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)