Query= MSMg01no163_m21.b1 MSMg01no163_m21.b1 CHROMAT_FILE:
MSMg01no163_m21.b1 PHD_FILE: MSMg01no163_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:29 2005
(314 letters)
>mm_chr5_67970980_67971692
Length = 713
Score = 582 bits (301), Expect = e-171
Identities = 307/309 (99%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaagtaagccttagaacatcaattataaactattctaagaaactttgcctggga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagtaagccttagaacatcaattataaactattctaagaaactttgcctggga 263
Query: 64 caggagtagagtggagctgttagggaatgaggcacacaggaaggattttttttttaattc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 caggagtagagtggagctgttagggaatgaggcacacaggaaggattttttttt-aattc 322
Query: 124 aatgggaaatttaagttgcttctattttttgttctttattaaacttttgacctaaataaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatgggaaatttaagttgcttctattttttgttctttattaaacttttgacctaaataaa 382
Query: 184 tcatcttgctgatatccaatgagtctaaaggagttcttgtgtttgttttaacccacagta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcatcttgctgatatccaatgagtctaaaggagttcttgtgtttgttttaacccacagta 442
Query: 244 tctttgtgaatagatttacaaatacgttgattgaaataagaaacaggaagtgcgcagttc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 443 tctttgtgaatagatttacaaatacgttgattgaaataagaaacaggaagtgtgcagttc 502
Query: 304 tctaaaata 312
|||||||||
Sbjct: 503 tctaaaata 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space: 214720
Effective search space used: 214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_m21.g1 MSMg01no163_m21.g1 CHROMAT_FILE:
MSMg01no163_m21.g1 PHD_FILE: MSMg01no163_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:29 2005
(297 letters)
>mm_chr5_68136555_68137254
Length = 700
Score = 530 bits (274), Expect = e-155
Identities = 295/306 (96%), Gaps = 9/306 (2%)
Strand = Plus / Minus
Query: 1 ttttgacccctcccctatcgttcac-tttttttcattaatctgaaagtttagtgaattct 59
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 493 ttttgacccctcccctatcgttcacttttttttcattaatctgaaagtttagtgaattct 434
Query: 60 cttccataattcacaaagggtgaggggaaactgttcgtgttgacatttttcaataaattt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttccataattcacaaagggtgaggggaaactgttcgtgttgacatttttcaataaattt 374
Query: 120 tatgacctgtgattatttctaagaatcctaaaatatttccaattcttttttttctgcagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatgacctgtgattatttctaagaatcctaaaatatttccaattcttttttttctgcagc 314
Query: 180 tggggcaggaagaaagatatgaattgctcaatgtcctagagttcaccaggtaaaggcact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tggggcaggaagaaagatatgaattgctcaatgtcctagagttcaccaggtaaaggcact 254
Query: 240 tgctctataattcatgtggggaaaaa-tacattttcatccattatt-------ttttttc 291
||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||
Sbjct: 253 tgctctataatccatttggggaaaaaatacattttcatccattattgttttttttttttc 194
Query: 292 ctctat 297
||||||
Sbjct: 193 ctctat 188
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 700
Length adjustment: 9
Effective length of query: 288
Effective length of database: 691
Effective search space: 199008
Effective search space used: 199008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
