XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGAGGGTGGGTGTTTT
TNATTTGTGATTTTTTCTCATTATAGATCAAGTATACTCCTATTCCTATT
CCATCCACTTTCCCACCCACAGTCCAATTTCTGCTTGTTTAGTCAACGCT
CCATTACACGGGGTCTCTCCTTTACGCCGCGCCCACCCTTATTATCATTC
CACTATACCAGAGGAGGGAGGAGAAAATCATATATTAACGTGGACGGTGT
AGTCTGAGGTGTTTTTAGGCATGCTAAAATTTTTTTTTTATATCGAAAAC
CCCCGCGTGCAACCAAAAGAGAATATTAAAATGACTCCCAAAATCAAAGC
CCGAGATAATAAAAAATGATTATAATTTATTTGGGGGCCCCCCCCCAAAA
AATTATTAAAAAAAACGGCGGGGGCGGGGGGGGTGGTTACTAATAGATAC
AAAATAATATAAAAAAGTAATATAAAGGATATAATAAAGACGTAAACTCC
TATGTACAACTAGAATTAATGGCTACGAAGTAGTCATGCTCATGTTTTCG
CTCTAGGCTGGCTATTCTTTTTCTTGATTCGTGTGGTGATCGCTATATGT
GTCGTGTCTGAATAATAGATGTATAGGATTGACGTCAATGACGTATTATA
TTTGTAGATCACCACACATAGAAAGCTGAAATAAAGGTAGGGCCTATCTT
CCGATAGCTTGCCTCGAGTACGATGTCATAGTTCGAATCATTTCTGTCAG
TGGGTGTTGGAATGGACTGAGAGTAGTGACTGAACGACATGTGTGCATAG
CACGCCGCAGATGTGTCGTTTGTTATA

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCTCACTGACAAATGACCTGGCCTGCAGATAT
AGACACAACTAGAGTTGTGTACCAGGGGCATTTCAATAATTTTAAATGAG
CATTTTAAGTAGATACTTCAAAAGGGAGAACTGAAAAATCAGCATTGGAA
ATGACAAATTTGTTCAATCCCTTCATGTTTACATTATGGCTTAATAGTGA
TTTTGTAAGAATATCTATGGAAAACATGTAGCAGCTTACTCTGTTAATAT
ATTGGATTTTTCTAAGGGTTTTTAAAAAGAAAACTTCATGATAATTTATT
TCTCTAGGAACAAAGAAACCTTTGCAAAGAATAACACAAGGAAACTGCAG
GCAATACTGACAACTTAAACCATGTATTTATGTATTTTTATTCCAGAAGA
GAAATACTATAGCAAATGCTATATATCAAACTTTAAAAACACTATTATGT
AGGATAATAAATGACTGACCTTGTTAAATACAAAGAACTCACATAAAGAG
ATAGAAGAAGATAACTGTCTCCTGAGAGAATCTGCCAGAGCCTGACAAAT
ACAGAGGCGGATGCTCGCAGCCAACCATTGGACTGAGCACGGGGTCCTCA
ATGGAGGAGTTAGAGAAAGGACTGAAGGAGCTGAAGGGGTTTGCAACCCC
ATAGGAAGAACACAATATCAACCAACCAGACCTCCCAGAGCTCN

Query= MSMg01no164_a12.g1 MSMg01no164_a12.g1 CHROMAT_FILE:
MSMg01no164_a12.g1 PHD_FILE: MSMg01no164_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:46 2005
         (656 letters)



>mm_chr5_46597564_46598618
          Length = 1055

 Score = 1224 bits (633), Expect = 0.0
 Identities = 651/657 (99%), Gaps = 2/657 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctcactgacaaatgacctggcctgcagatatagacacaactagagttgtgtaccaggg 60
           |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 688 tgctcactgacaaatgacctggcctgtagatatagacac-actagagttgtataccaggg 630

                                                                       
Query: 61  gcatttcaataattttaaatgagcattttaagtagatacttcaaaagggagaactgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 629 gcatttcaataattttaaatgagcattttaagtagatacttcaaaagggggaactgaaaa 570

                                                                       
Query: 121 atcagcattggaaatgacaaatttgttcaatcccttcatgtttacattatggcttaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atcagcattggaaatgacaaatttgttcaatcccttcatgtttacattatggcttaatag 510

                                                                       
Query: 181 tgattttgtaagaatatctatggaaaacatgtagcagcttactctgttaatatattggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgattttgtaagaatatctatggaaaacatgtagcagcttactctgttaatatattggat 450

                                                                       
Query: 241 ttttctaagggtttttaaaaagaaaacttcatgataatttatttctctaggaacaaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttttctaagggtttttaaaaagaaaacttcatgataatttatttctctaggaacaaagaa 390

                                                                       
Query: 301 acctttgcaaagaataacacaaggaaactgcaggcaatactgacaacttaaaccatgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acctttgcaaagaataacacaaggaaactgcaggcaatactgacaacttaaaccatgtat 330

                                                                       
Query: 361 ttatgtatttttattccagaagagaaatactatagcaaatgctatatatcaaactttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttatgtatttttattccagaagagaaatactatagcaaatgctatatatcaaactttaaa 270

                                                                       
Query: 421 aacactattatgtaggataataaatgactgaccttgttaaatacaaagaactcacataaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aacactattatgtaggataataaatgactgaccttgttaaatacaaagaactcacataaa 210

                                                                       
Query: 481 gagatagaagaagataactgtctcctgagagaatctgccagagcctgacaaatacagagg 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gagatagaaaaagataactgtctcctgagagaatctgccagagcctgacaaatacagagg 150

                                                                       
Query: 541 cggatgctcgcagccaaccattggactgagcacggggtcctcaatggaggagttagagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cggatgctcgcagccaaccattggactgagcacggggtcctcaatggaggagttagagaa 90

                                                                    
Query: 601 aggactgaaggagctgaaggggtttgcaaccccataggaagaac-acaatatcaacc 656
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 89  aggactgaaggagctgaaggggtttgcaaccccataggaagaacaacaatatcaacc 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space:   675070
Effective search space used:   675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)