BAC Information

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BAC

Clone NameMSMg01-164D03
Chromosome5 (Build37)
Map Location 151,926,262 - 151,926,571
singlet/doubletsinglet
Overlap geneStard13
Upstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510
Downstream geneLOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164D03.T7 (MSMg01no164_d03.b1)MSMg01-164D03.TJ (MSMg01no164_d03.g1)
ACCAG362749AG362750
length737725
length of high quality
(start - end)
313 (52 - 364)236 (132 - 367)
definitionCHROMAT_FILE: MSMg01no164_d03.b1 PHD_FILE: MSMg01no164_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:58 2005CHROMAT_FILE: MSMg01no164_d03.g1 PHD_FILE: MSMg01no164_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGATGGCCCTGTGAGCCACCCACTTGACAGCATGACCTT
AGGCCATCAGTGGATCCTATGGGTCCACAGCTCAGCTTCTGCACTGTGGG
TAAAAGACTGTCTTACCCTATAAGATGGTCTTGGAGAACAAACGACACCA
TATACACAGAAGTGTTAAACCTCTTTCTAGAATATTCCTTCTGCCCCTGC
CCCTCACCCTGTTTTAATAGATCCTGACCATTGCACAAAGGCTTCTCTTT
ACCTTCCAATCTCCTCAAAGATATCTATGTCTCTTTCAGTGCTCTGGCTC
TCCCAGAACTATCCATTTTGTTACTACCACGTCCCCCCCATTCATTGATC
AACCCCACCGCAGGCCTCCTGTTCTCGCCCCCACAAAATATTTTCCCTCT
GATGTTCTGGAGAGCTCCACTTTTGTTTTATTTTCATGCGTATATGTGCG
TACTTGGGTGAGTTTCTGTGCGTCACACGCATGTATAACCCTGTGTCCGC
CTTAATACTCCTTTATTTCCCCTGTAACCCGCTTTATAGACACTACCACG
TTGTTGCTGGATACCTAATCCCTGTTCCCTCTGTAGCACCCCCCTCAGTG
CCCTTTAACCGCCGTAGTATTTTCCTCCAGCTCTCCTTCTTCTACTATGT
CTTTTTACTAACTTATTTTTCTACTCCTCCCTTCTTT
CCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAGGGTCGGCTCAAGA
ATTACCTAGGGCATTGATGAATTTCACGCAAGCAAAGTTCGATTTTGCTT
AGGTATTTGGCAAGTCATTGCTTGGAGGCAGCTATAACAAAACAATACTG
AAAGGAAGCACACAGATCCACTCTCAAGGACAAGTTTGGAGCATACATGC
TATGGGATGCCACAGTTCCAGGAGACTAAGTTTACGTGAACTTTTCGCCT
CAGGACTTCATCCAGGTTTCTAGTCCTGTCACGTGTGTCACTACTAGAGT
GGATGTAGCAAGTCCCTTCTTTTATGTGAGCCCCCCTCGCGTCCTTGCTG
TAGATGATAACTTTTAGATCAGTCCGCATTGAATAAACAAAAGGGTAGTT
TTTTTTTTTTCTTTAATGCCTTTTGTTTGTTTGTTTCCCAGATTAAACCT
AAGTCCTTTCATGAGCTAGTGAGCGTTTGACTACTGAGTTATATCTTCAG
TGCGGCTTCCTTCCCTCTCTCCCCTCCCTCTTTCCTTCTGTAAAGGTTTG
TAGACAGGCCTCACTCTATAGCCCAGGTAGACCAGGTTTATGTTTTAATT
TTTCTCAACTTGCAAACAGCTGCTACAGATCATGAAACATTACTGTTCTT
GCCGAAATGAGGCATATTGTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_d03.b1 MSMg01no164_d03.b1 CHROMAT_FILE:
MSMg01no164_d03.b1 PHD_FILE: MSMg01no164_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:58 2005
         (313 letters)



>mm_chr5_151926059_151926771
          Length = 713

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgatggccctgtgagccacccacttgacagcatgaccttaggccatcagtgga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattctgatggccctgtgagccacccacttgacagcatgaccttaggccatcagtgga 454

                                                                       
Query: 64  tcctatgggtccacagctcagcttctgcactgtgggtaaaagactgtcttaccctataag 123
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 453 tcctatgggtccacagctcagcttttgcactgtgggtaaaaaactgtcttaccctataag 394

                                                                       
Query: 124 atggtcttggagaacaaacgacaccatatacacagaagtgttaaacctctttctagaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atggtcttggagaacaaacgacaccatatacacagaagtgttaaacctctttctagaata 334

                                                                       
Query: 184 ttccttctgcccctgcccctcaccctgttttaatagatcctgaccattgcacaaaggctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttccttctgcccctgcccctcaccctgttttaatagatcctgaccattgcacaaaggctt 274

                                                                       
Query: 244 ctctttaccttccaatctcctcaaagatatctatgtctctttcagtgctctggctctccc 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 273 ctctttaccttccaatctcctcaaagatatctatgcctctttcagtgctctggctctccc 214

                     
Query: 304 agaactatcc 313
           ||||||||||
Sbjct: 213 agaactatcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)