BAC Information

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BAC

Clone NameMSMg01-164E22
Chromosome5 (Build37)
Map Location 75,280,667 - 75,435,321
singlet/doubletdoublet
Overlap geneEG619945, Chic2
Upstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
Downstream geneGsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164E22.T7 (MSMg01no164_e22.b1)MSMg01-164E22.TJ (MSMg01no164_e22.g1)
ACCAG362827AG362828
length741739
length of high quality
(start - end)		314 (45 - 358)647 (74 - 720)
definitionCHROMAT_FILE: MSMg01no164_e22.b1 PHD_FILE: MSMg01no164_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:07 2005CHROMAT_FILE: MSMg01no164_e22.g1 PHD_FILE: MSMg01no164_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,435,013 - 75,435,321)(75,280,667 - 75,281,254)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGGTTTAGTTAGATTTGAGCTTATCTAGTGTGAAATCGACAAAT
ACTTTAATTTTTATATGACTGGCTAAGAAGAATACAGGGACTAAATCATG
AAAAATAAATTGTGCATACTTATTTATGTTGATAAACAATACTCCAAACA
ATAACTTAAATAATACAGCTCTAAAATTTTGAGAGACACCTTGAGTTTAT
ACTGTTACTATGTTACAGGCCCTGAGCTGAGGAAGAGCTCAGCTCCGGAA
TCTTTTAAATTAGATGTACTGACTGATGGATGTAATGCCAGTGGAGGGAG
GGAGACCTTTGTTAGCTCCCCCCTCCCCTGCAATAGAGTGCCGAACGGCC
TGCCTGCATGCCCCCGTTTGATTCTGTCTCTGTCTCTGTCTCTGTGTGTC
TCTTTTTGTAGCGTGCTCTGACTTGAAGCTCAAACTATCCTCCTGCCTTA
GCCACCACTCCTGGCAGGTTTTTAATTAGATAGCTGTGTTAAATTTTGTT
CTCAGCAAGGTTAAGCCTTAACTAGAACTTGAACAACTGATGCTCCTGAG
CATCTGTACACTACTGTACTGATTTTCCGTAGAAGATTCTTTTGCTCACT
TGACCCAGCCAGAGTCATCAGGCTGAGAGTCTAGGATATGTGTATTTTAT
ACAGGATCTTGATAGGCTGCTCTTGGACTCCTGAGCTGACT

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAAGGCGGGGAAGGAGCCAAACTTG
CGTGTGGGGGACAGCATCCTGTGAGCAGGGCCTGGGCTCTGATTGTAAAA
GTGGGGAATAGAGAGAGAGCTGATCTGAGCAACAGTCTCACCCTTCCTGG
CCTGCTGTGTAATGTGAGCTGAGCTGCTCTGCTGTGCCTTCCCTGCATCA
TGGACTGAAGTCTCTGAAACCTAAGCCCAAATAAACCGTGATGACCGCAA
TGCAAATTTCAGTCTTGTACAACCAAGCGTTTGAGAACATTTTTGTACCT
CTTCCTTCTGCTGTACCGTCTGCCATAGTCAACCACACACAGCCACTCGA
ACACAAAGGCTGGCATCCTTTGGGTCTAGTGGTGCACTCTGCAGCATTGG
AACTGGGGTTTGAGGTGGTCACACTTTAAGGATTTCTCGGCTAAACAGAG
CTAATTAACTTGGTTGAACTAAGTTACTGCCTCTTCATTTTTCTCATCAC
TGTGAGAAACCTGTCAAGAATCTCAATCAAGGATGGCTGTATTTTCCCTC
ACAGTTCAGAAGAATACAGGCTCAGCAGCAGGAGAATCCTGGTCTACGGC
GCCTACCAAAAGAAGAGCTAAGAAGCAAAAGCACTTCTCTGGCTTCTCCT
CTTCCCCTTTTAAATCAGTTCAGGACCCCGGTCCATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_e22.b1 MSMg01no164_e22.b1 CHROMAT_FILE:
MSMg01no164_e22.b1 PHD_FILE: MSMg01no164_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:07 2005
         (314 letters)



>mm_chr5_75434809_75435522
          Length = 714

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaggtttagttagatttgagcttatctagtgtgaaatcgacaaatactttaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcagaggtttagttagatttgagcttatctagtgtgaaatcgacaaatactttaat 454

                                                                       
Query: 65  ttttatatgactggctaagaagaatacagggactaaatcatgaaaaataaattgtgcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttttatatgactggctaagaagaatacagggactaaatcatgaaaaataaattgtgcata 394

                                                                       
Query: 125 cttatttatgttgataaacaatactccaaacaataacttaaataatacagctctaaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttatttatgttgataaacaatactccaaacaataacttaaataatacagctctaaaatt 334

                                                                       
Query: 185 ttgagagacaccttgagtttatactgttactatgttacaggccctgagctgaggaagagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttgagagacaccttgagtttatactgttactatgttacaggccctgagctgaggaagagc 274

                                                                       
Query: 245 tcagctccggaatcttttaaattagatgtactgactgatggatgtaatgccagtggaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcagctccggaatcttttaaattagatgtactgactgatggatgtaatgccagtggaggg 214

                    
Query: 305 agggagacc 313
           |||||||||
Sbjct: 213 agggagacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_e22.g1 MSMg01no164_e22.g1 CHROMAT_FILE:
MSMg01no164_e22.g1 PHD_FILE: MSMg01no164_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:07 2005
         (647 letters)



>mm_chr5_75280408_75281454
          Length = 1047

 Score = 1075 bits (556), Expect = 0.0
 Identities = 580/588 (98%)
 Strand = Plus / Plus

                                                                       
Query: 60  tgggctctgattgtaaaagtggggaatagagagagagctgatctgagcaacagtctcacc 119
           |||||||||||| |||||||||||||  | ||||||||||||||||||||||||||||||
Sbjct: 260 tgggctctgattataaaagtggggaacggggagagagctgatctgagcaacagtctcacc 319

                                                                       
Query: 120 cttcctggcctgctgtgtaatgtgagctgagctgctctgctgtgccttccctgcatcatg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttcctggcctgctgtgtaatgtgagctgagctgctctgctgtgccttccctgcatcatg 379

                                                                       
Query: 180 gactgaagtctctgaaacctaagcccaaataaaccgtgatgaccgcaatgcaaatttcag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gactgaagtctctgaaacctaagcccaaataaaccgtgatgaccgcaatgcaaatttcag 439

                                                                       
Query: 240 tcttgtacaaccaagcgtttgagaacatttttgtacctcttccttctgctgtaccgtctg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 tcttgtacaaccaagcgtttgagaacatttttgtacctcttccttctgctgtagcgtctg 499

                                                                       
Query: 300 ccatagtcaaccacacacagccactcgaacacaaaggctggcatcctttgggtctagtgg 359
           |||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct: 500 ccatagtcaaccacacacggccactcgaacacaaaggctgggattctttgggtctagtgg 559

                                                                       
Query: 360 tgcactctgcagcattggaactggggtttgaggtggtcacactttaaggatttctcggct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcactctgcagcattggaactggggtttgaggtggtcacactttaaggatttctcggct 619

                                                                       
Query: 420 aaacagagctaattaacttggttgaactaagttactgcctcttcatttttctcatcactg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaacagagctaattaacttggttgaactaagttactgcctcttcatttttctcatcactg 679

                                                                       
Query: 480 tgagaaacctgtcaagaatctcaatcaaggatggctgtattttccctcacagttcagaag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgagaaacctgtcaagaatctcaatcaaggatggctgtattttccctcacagttcagaag 739

                                                                       
Query: 540 aatacaggctcagcagcaggagaatcctggtctacggcgcctaccaaaagaagagctaag 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatacaggctcagcagcaggagaatcctggtctacggcgcctaccaaaagaagagctaag 799

                                                           
Query: 600 aagcaaaagcacttctctggcttctcctcttccccttttaaatcagtt 647
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aagcaaaagcacttctctggcttctcctcttccccttttaaatcagtt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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