NNNNCCCCCACATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCGTGATGCTACTGCATAACCACAATCTTGCTA
CTGTTACAAATTGTAATATAAATATCTGATATGCAGGATATCTGATATGA
ACCCCCAAACGGGTCACAACCTACAGATCCACATCTTCTGCTCTATAGGT
TCTGTTCTCTTTTAGAACACAGCCTTGAAAGTTGGCTCTGCTTCTAAGGT
AAATCTGAGGGTGGTGAATGCAACTGTTTAAACATCACTCATTTTAAAGC
CTTTACTTTCAATGTATATGTAATGTTTACTATCAATGTTAAATAAGTTA
AAATGTTTCTTTCTAAAAAGATTTATTTTCACTTCATGTGTATGAATGCT
TTCCCTGCACGTATATGGATGTACATTGCACACTGCCCAAGAAGTTCAGG
AGTTGTCAGATCCCTGAACTGGAGTCAGGATGGCTGTGAACCATCACGTG
AGGGCTGTGAACTGAATCCAGGTTCTCTGCAAGAACAACTGCAAGAGCAA
CAAGTGTTCTTACTGTGGAGCCATCTCTCCAGTGCCAGATAAAATGTTTC
CTAAGCAATAGTTATTTAAAATCTAAGTTTAGAAGAATAATATCCTGCTC
TTCAAGAATTCCAGTACTTAAAATTTGCTCTGCAAAGAGCAAAGATC

CCNAAACAACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGCTCCATCT
GCCATTTTCTCCTGAGTGCTGGCATTAAAGGCATGTACATAGGCCCAGCT
GAAGGATTTTCTTTAAAAATAAAACCAACATTTCCTTAGTCTTCCTGCCA
TCCTTGCAAGAAATCCGGGGCCATCTGTGGGCACAAGAGGTTTGTCCTCC
TATTCCAGGGGACTGCTGAGGTTCATTTTCTATGGCCTTTCTGGAGCTAC
CGTTTCAGATGCTTAAGGGAGGGGAAGACATTCTCTCCAGCTGCCACAGA
CAATGCCCACTACAGGAATAATTACAACGCACCGCACAATCTGGGTCCCT
GGAGGTGCTTTCTAGGATCAGGGAAGACACCGTTCCAAGTCCCCTACTAC
TTGCTAATGTCCCTCGGGTCTTTTGTCTACCTACCAATGGGGTCTGGGCT
CTTTGGACAGTGTATAGGACATTGCTGACCTGTGTAATTAAAAAAGCAGT
TGTGAGCTAGTTGTAGAAGTATACACCTGCAAGCACTTGGGAAGGACAGG
AGTTCAAGGCCAACCTGGACTACATGAGAGACTGCCAAAAGAAAAGGAAG
AAAGGGAGGCAGCTATACAATTAAGAATAGAGCTTACTCTGCGTATG

Query= MSMg01no164_h11.b1 MSMg01no164_h11.b1 CHROMAT_FILE:
MSMg01no164_h11.b1 PHD_FILE: MSMg01no164_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:19 2005
         (619 letters)



>mm_chr5_20293393_20294411
          Length = 1019

 Score = 1087 bits (562), Expect = 0.0
 Identities = 595/606 (98%)
 Strand = Plus / Plus

                                                                       
Query: 14  tgatgctactgcataaccacaatcttgctactgttacaaattgtaatataaatatctgat 73
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 214 tgatgctactacataaccacaatctcgctactgttacaaattgtaatataaatatctgat 273

                                                                       
Query: 74  atgcaggatatctgatatgaacccccaaacgggtcacaacctacagatccacatcttctg 133
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 274 atgcaggatatctgatatgaacccccaaacgggtcacaacccacagatccacatcttctg 333

                                                                       
Query: 134 ctctataggttctgttctcttttagaacacagccttgaaagttggctctgcttctaaggt 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctctataggttctgttctcttttagaacacagccttgaaagttggctctgcttctaaggt 393

                                                                       
Query: 194 aaatctgagggtggtgaatgcaactgtttaaacatcactcattttaaagcctttactttc 253
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 394 aaagctgagggtggtgaatgcaactgtttaaacatcactcattctaaagcctttactttc 453

                                                                       
Query: 254 aatgtatatgtaatgtttactatcaatgttaaataagttaaaatgtttctttctaaaaag 313
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aatgtatatgtaatgcttactatcaatgttaaataagttaaaatgtttctttctaaaaag 513

                                                                       
Query: 314 atttattttcacttcatgtgtatgaatgctttccctgcacgtatatggatgtacattgca 373
           ||||||||| | || |||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 514 atttatttttattttatgtgtatgaatgctttccctgcacgtatatggatgtacactgta 573

                                                                       
Query: 374 cactgcccaagaagttcaggagttgtcagatccctgaactggagtcaggatggctgtgaa 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cactgcccaagaagttcaggagttgtcagatccctgaactggagtcaggatggctgtgaa 633

                                                                       
Query: 434 ccatcacgtgagggctgtgaactgaatccaggttctctgcaagaacaactgcaagagcaa 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ccatcacgtgagggctgtgaactgaatccaggttctctgcaagaacaactgcaagagcaa 693

                                                                       
Query: 494 caagtgttcttactgtggagccatctctccagtgccagataaaatgtttcctaagcaata 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 caagtgttcttactgtggagccatctctccagtgccagataaaatgtttcctaagcaata 753

                                                                       
Query: 554 gttatttaaaatctaagtttagaagaataatatcctgctcttcaagaattccagtactta 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gttatttaaaatctaagtttagaagaataatatcctgctcttcaagaattccagtactta 813

                 
Query: 614 aaattt 619
           ||||||
Sbjct: 814 aaattt 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_h11.g1 MSMg01no164_h11.g1 CHROMAT_FILE:
MSMg01no164_h11.g1 PHD_FILE: MSMg01no164_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:20 2005
         (281 letters)



>mm_chr5_20445138_20445818
          Length = 681

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagctccatctgccattttctcctgagtgctggcattaaaggcatgtacataggccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 545 acagagctccatctgccattttctcctgagtgctggcattaaaggcacgtacataggccc 486

                                                                       
Query: 61  agctgaaggattttctttaaaaataaaaccaacatttccttagtcttcctgccatccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agctgaaggattttctttaaaaataaaaccaacatttccttagtcttcctgccatccttg 426

                                                                       
Query: 121 caagaaatccggggccatctgtgggcacaagaggtttgtcctcctattccaggggactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caagaaatccggggccatctgtgggcacaagaggtttgtcctcctattccaggggactgc 366

                                                                       
Query: 181 tgaggttcattttctatggcctttctggagctaccgtttcagatgcttaagggaggggaa 240
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 365 tgaggttcattttctatggcctttctggagctaccatttcaggtgcttaagggaggggaa 306

                                                    
Query: 241 gacattctctccagctgccacagacaatgcccactacagga 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gacattctctccagctgccacagacaatgcccactacagga 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)