BAC Information

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BAC

Clone NameMSMg01-164L16
Chromosome5 (Build37)
Map Location 20,655,879 - 20,656,299
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903
Downstream geneA530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164L16.T7 (MSMg01no164_l16.b1)MSMg01-164L16.TJ (MSMg01no164_l16.g1)
ACCAG363109AG363110
length748744
length of high quality
(start - end)
---459 (69 - 527)
definitionCHROMAT_FILE: MSMg01no164_l16.b1 PHD_FILE: MSMg01no164_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:40 2005CHROMAT_FILE: MSMg01no164_l16.g1 PHD_FILE: MSMg01no164_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGACCGATGCCGTAGGATGCGATGTGTCCTTCACCTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTGCAATTCACCTAGCCATTGGTTCTATATCGAGAACTG
CAGAATAACTTCTTAAATGAGATCGGCACAGGAAGAGGACAGAAGGTCTG
AAGCCCTGGGCCCAGAAGAGGTGTAGGAGCAATGGACCGAGATAAGAAGG
CCTCTGCTGGGTGTGTTTGTGGACACTATTGTGTATAATGGACTCATTCC
TGTGATACCCAGCTAAAATGGGGTGGAGCTGCTACAGTAAAAAACAAAAA
CAAAAACAAAAAAAAACTGCGATCAAGGAGCCTGTGTCTTAACAAACAAT
CTAATCAAACTTTAAGGCTAATTTTACATGGCAACTTTCCATAAAACTGT
TGGCCATGACTTTAAGGTCACACCCACCTTGCAATGGCTGCCAGATGTCA
ACCAGAGGTGGCTAGCTCTTCAGCGACATCCAAGCGCTAACACGCTTTTT
TTCAGAACACCTCGAGATGAGAAAGATACAAGTGGAAGAAATCTTCTGGA
AAGCAATAATGCTTTGTGGTTTCAATCCAAAAATCTTCCTCAGACTTGTC
CATACTCTGGATGTTATTTTGGGGGTTTGGCAACGTTGGCTAGGTAGAGT
GCTTTTTCCCCCTTCTTTTCGTTCCCTCCCTTTTCCCTTGTTTTCGCTTC
CTTTTTCCATTCCCTTCCTTCTTTTCGCTTTTCTTTTACTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_l16.g1 MSMg01no164_l16.g1 CHROMAT_FILE:
MSMg01no164_l16.g1 PHD_FILE: MSMg01no164_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:40 2005
         (459 letters)



>mm_chr5_20655879_20656737
          Length = 859

 Score =  717 bits (371), Expect = 0.0
 Identities = 406/421 (96%), Gaps = 6/421 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctagccattggttctatatcgagaactgcagaataacttcttaaatgagatcggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcacctagccattggttctatatcgagaactgcagaataacttcttaaatgagatcggca 362

                                                                       
Query: 61  caggaagaggacagaaggtctgaagccctgggcccagaagaggtgtaggagcaatggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 361 caggaagaggacagaaggtctgaagccctgggcccagaagaggtgtaggagcaatggact 302

                                                                       
Query: 121 gagataagaaggcctctgctgggtgtgtttgtggacactattgtgtataatggactcatt 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 301 gagataagaaggcctctgctgggtgtgtttgtggaaactattgtgtataatggactcatt 242

                                                                       
Query: 181 cctgtgatacccagctaaaatggggtggagctgctacagtaaaaaacaaaaacaaaaaca 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctgtgatacccagctaaaatggagtggagctgctacagtaaaaaacaaaaacaaaaaca 182

                                                                       
Query: 241 aaaa------aaaactgcgatcaaggagcctgtgtcttaacaaacaatctaatcaaactt 294
           ||||      |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaacaaaaaaaaactacgatcaaggagcctgtgtcttaacaaacaatctaatcaaactt 122

                                                                       
Query: 295 taaggctaattttacatggcaactttccataaaactgttggccatgactttaaggtcaca 354
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 121 taaggctaattttacatggcaactttccataaaactgttggccatgactttaaggttaga 62

                                                                       
Query: 355 cccaccttgcaatggctgccagatgtcaaccagaggtggctagctcttcagcgacatcca 414
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61  ttcaccttgcaatggctgccagatgtcaaccagagttggctagctcttcagcgacatcca 2

            
Query: 415 a 415
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)