BAC Information

Click to search

BAC

Clone NameMSMg01-164M20
Chromosome5 (Build37)
Map Location 118,939,717 - 118,940,025
singlet/doubletsinglet
Overlap geneLOC665162
Upstream geneKsr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
Downstream geneThrap2, LOC100039488, EG665194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164M20.T7 (MSMg01no164_m20.b1)MSMg01-164M20.TJ (MSMg01no164_m20.g1)
ACCAG363159AG363160
length751750
length of high quality
(start - end)
313 (40 - 352)530 (77 - 606)
definitionCHROMAT_FILE: MSMg01no164_m20.b1 PHD_FILE: MSMg01no164_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:45 2005CHROMAT_FILE: MSMg01no164_m20.g1 PHD_FILE: MSMg01no164_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTATGTAGACCTGGCTGTCCTGGAACTCACAGAGCTCCTGCTTCTGCCTC
CTGAGTGATGGGGTTAGAGGTGTGCACCACCATATCCAGCCGTGAGATTT
TCCTCCATCTCGAGTATAAGAATAAAGCTTGTTCTTAGATCCTGGCTATG
CAAAAATTGGCAGCTGGCTGTTTCCTAAAGATGATTCTTATACTTATAAA
TGCTCAGGGAAAGCCAGGCTTGGTGACACAAATCTGTAATTCTAGCTTTT
GGGAGACTGAGTCATAAGGACCCTGGGTTCAAAGCCAGGCTAGACTATAC
AATGATTTTTCTGCCTCACCCCCTCCAAAAAAAAAAAAAATCAACTAACA
ATTTTAGAAACCCCACAAAACAAACAAACCCTAAACGGTTGGAGGAGGGG
GAGCCAAAATAAGGCTCATTTGACATCGGATTGGAGCTGAAACCAGGGGA
GTTGACCCATACTCAAGAGGCTTAACCCAAGACCCCAGGACCAGGAAGAT
AACAGACCAACCAGAGTCTTTGAAGTTATATCCTAGTTGGGAGGTGGACT
AATACTGATCACCTACTTTGAGGCAAATCAAGTTTGGAAGCAAATCCCAG
CTTGGAAGCCAGCCTTGGCCTGTCCATTTTGGAGAATGAATTGTTCAGCC
ACACCGGCAGCTTGAGGTCGTTGGTCCAGTTCCAATCTCCTTCGTTCCCC
T
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGACAGGAACTTGGAGTCAGGAG
TTGATGCAGAGGCCATGGAGGGGGCTACTGACTGGCTTGCTCCTTGTCTT
AGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAATCTTA
TAAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGCTCAGTC
CATTATCATCAAGGTGGGAGCATGGCAGCATCCAGGCAGGCATGGGTCTG
GAGGAGCTGAGAATTTTACATCTTCATCTGAAGGCTGCCAGGAGAAGGCT
GGCTTCTAGACAGCTAGAATGAGGGTCTTAAAGGCCACGCCCACAGTGAC
ACACCCACTCCAACAAGGCCACACCCACTCCACAAAGCCACACCTACTCC
AACAAAGCCACACCCACTCCAACGGGGCCACACCTTCTAATAGTGCCACA
CCCTGGGCTGAGCTTATTCAAACCATCACACTCCTTATGGTTTGCTCAGC
CTGCTTTCTAATAGTACCCAGGACCACCAGCCCAGGGATGGCCCGGCCCA
TTGTGGGCGGGGCCTTCCCTATCAACCACTAATTAGGAAGATGCCCCACA
GGTTTGCCTACAGCCCTATCTTAGGGAGGTGTTTTTTTTTTCACCTCAGT
CGATCCCCCCCCTTTTCTGAGCACTTTAGTTTGTGCCTAGCTGACCATAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_m20.b1 MSMg01no164_m20.b1 CHROMAT_FILE:
MSMg01no164_m20.b1 PHD_FILE: MSMg01no164_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:45 2005
         (313 letters)



>mm_chr5_118939511_118940223
          Length = 713

 Score =  528 bits (273), Expect = e-154
 Identities = 300/309 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctatgtagacctggctgtcctggaactcacagagctcctgcttctgcctcctg 64
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctctatgtagaccaggctggcctggaactcacagagctcctgcttctgcctcctg 456

                                                                       
Query: 65  agtgatggggttagaggtgtgcaccaccatatccagccgtgagattttcctccatctcga 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 455 agtgatggggttagaggtgtacaccaccatatccagccgtgagattttcctccatctcgt 396

                                                                       
Query: 125 gtataagaataaagcttgttcttagatcctggctatgcaaaaattggcagctggctgttt 184
           ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 395 gtataagaataaaacttgtccttagatcctagctatgcaaaaattggcagctggctgttt 336

                                                                       
Query: 185 cctaaagatgattcttatacttataaatgctcagggaaagccaggcttggtgacacaaat 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 335 cctaaagatgattcttatacttataaatgctcagagaaagccaggcttggtgacacaaat 276

                                                                       
Query: 245 ctgtaattctagcttttgggagactgagtcataaggaccctgggttcaaagccaggctag 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 275 ctgtaattctagcttttgggagactgagtcagaaggaccctgggttcaaagccaggctag 216

                    
Query: 305 actatacaa 313
           |||||||||
Sbjct: 215 actatacaa 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)