BAC Information

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BAC

Clone NameMSMg01-164N08
Chromosome5 (Build37)
Map Location 105,857,694 - 105,857,921
singlet/doubletsinglet
Overlap geneLrrc8b
Upstream geneSpp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650
Downstream geneLrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164N08.T7 (MSMg01no164_n08.b1)MSMg01-164N08.TJ (MSMg01no164_n08.g1)
ACCAG363183AG363184
length845723
length of high quality
(start - end)
232 (48 - 279)289 (81 - 369)
definitionCHROMAT_FILE: MSMg01no164_n08.b1 PHD_FILE: MSMg01no164_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:47 2005CHROMAT_FILE: MSMg01no164_n08.g1 PHD_FILE: MSMg01no164_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATGAATCTGAATTTGTGAAGTTCATCTCTCTAGGCAGAATTG
GATGAGTTTGTTGTTGGCCCAGTTTCAGTGCTGAGACTCCGTCCTCTGGA
GAGCCATGACTTATCTCCTAGCTGTGTTTGTGCATCATGCGTGATGCAGT
TTCTCAAGGCCGCAGATTTCAGTGTGTGAGGGAGCGTGAGTGTGCGTGAG
AGTATGAATGTGTGTGAGAGTGTGAGTGTATCGCTTTGTGCGTTCTTACC
GTTCTTCCCCCTTTCTCCTTTTTTTTTTTTTTTTTCTCCCCCCTGCTCCC
CTTAACCCCTCCCCATTTTGGGTGGACTTCCCAAGGACGGGGCCCCCAAA
AGTGTGGTATTTGTTTTTTTTTTTTTTTTTTTTCTCCCCCCCCCAAAAAA
AAAAAAAAAAACCCCTCTGTGTTCTTGCCCCTCCCTTTTTCTCCCCCCCC
CTTTTTTTTCTCTTTCTTTCCCCTCCCTTTTCTCCTTCCCTCCCCCTTTC
CCTTTTTTTTATTTTCCCCCCTCCTCTTTCCCTTTTCCTTTTATCCTTTT
TCTTTTCTTCCTTTTTTTTCTCCCTTTTTCTTCTTTTTCCTATTTTTCCC
TCCCTTTTTTTTTTATCCCTTTCCTCTTTCTCTCTCCCCCCTCTCCCCTT
CCCCCTTTCCTCCCCTTTCCCTTGTTTCCTTTATTCTCTTCCTCTCTTTT
TACCGTCCTTTTTTTCCTCACGCCTTCCTTTTTCTTCCATTCTTTTCTTC
TCTCCTTTTTCTCTTTCCCTTTTCCTTTTCCTCTCCTTTCCCCTC
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCGAAGTTAGCTTTACAA
CCACACTGTGTTTCACAGGATGGTGACTCGGGACCTTGCTTTGCTATTCT
GCCAATCTTCTGTGAAAGGTTTCCCTGTGAGGCTGGAGAAAATGGCTCAG
CAGTCGAGAGCAGAGCTGATCTTCCAGAGGACGGTTCCCAGCACCCACAG
CAAAGCTCCCAACTGTGACTCCGATTCCCAGGGATCTGATGCCGCCTTCT
GGCCTCCCAGGGGACTGCACACATGTGGAGCACATACATACTTGCAGGCA
GATAAAAGACCCGTACCACTTTATAAGCCAGAATCTGCCATTATACAGAG
GGCACAATGCTAATTTTTGAGCGCCCCCCAGGTCTAGAAAGCCCCTTGAG
GGATATGCATGTGTACCTAAATGAGCAAAGTTGAGAAGGGAACAGGGCTA
GATGCAACTGTGAAGTTCATGGGAACCTTATGTTTGGGTAAGGCCCAGTA
GGAAACCTACCAAGGTGATTGAAAAATTCTGTGTCAGCCAATATTAAAGA
TTGAGCTAACTCTTTGTGTGCGGGTGGTAAAGGATTCTCCCTTACGCCAT
AGGGTCGTTGACTGACTATCCCAGTGTTCGTACTGATTTATTTTCCTAAG
AGCTGTCGTTTCCTGATACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_n08.b1 MSMg01no164_n08.b1 CHROMAT_FILE:
MSMg01no164_n08.b1 PHD_FILE: MSMg01no164_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:47 2005
         (232 letters)



>mm_chr5_105857490_105858121
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 225/228 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgaatctgaatttgtgaagttcatctctctaggcagaattggatgagtttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgaatctgaatttgtgaagttcatctctctaggcagaattggatgagtttgt 264

                                                                       
Query: 65  tgttggcccagtttcagtgctgagactccgtcctctggagagccatgacttatctcctag 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 tgttggcccagtttcagtgctgagactccatcctctggagagccatgacttatctcctag 324

                                                                       
Query: 125 ctgtgtttgtgcatcatgcgtgatgcagtttctcaaggccgcagatttcagtgtgtgagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtgtttgtgcatcatgcgtgatgcagtttctcaaggccgcagatttcagtgtgtgagg 384

                                                           
Query: 185 gagcgtgagtgtgcgtgagagtatgaatgtgtgtgagagtgtgagtgt 232
           ||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 gagcgtgggtgtgtgtgagagtatgaatgtgtgtgagagtgtgagtgt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)