XXXXXXXXXXXXXXXXXXXXXXXXXTCCGNAAATGCGCGGAATTCTACTC
CTTTTGACCGTCTTCATATGCCTGCTTCTTCAGCTGCCTGTTCTGACTAA
ATAGTGGCTTCCTATTTTTGTCCACTTTACTGTTTCCTTTCTTAACAGAA
AAGCCTTTGGCTGAATCACAGCCCGAACTGGGAACCTGGGGCGATGGCAA
GGGTGAAGATGAGCTGTCTCCAGAAGAGATACAGATGGTAATCCTAACTG
CTTCCCTTTAACTGCCTGTCCTAAGACTTTGAATAAGTGGGAGGTTGTGC
AAATGTCCTTTTCCTAATTTGATACTGAGCTTTAAAAGTATAAACACATT
TTAGATACACTTACCCACTTAATATCCTACTTCCTGTTAGGCTTTTCATG
ATGTCAATTCACGGTAGCATAATTTCAACAGAAGTTAGCTTGGATGGTCT
TGCTAAGCGTCTTCACCAGCAGGATGCTAGGCATCCATTTTAAATGTGTC
TCTTATGTTTGCAAAGATGGTGCATATACTCAGTTGAGTCTCTGGAGTCA
TAGAAATAGAAAGAAACATGGTGATGGCTGAAGGATGACAGGAACAACCA
TCAGGACAATGATGACCTCCTGGTGACCTGTCCCTTGTGCTAAGTGCTAT
TATTTGTCTTTTCTGAGTGGTTTCCGGGGACAAAGTTTTGGTGATAGCTT
CCCAAACGGCAGCCTCCTGGCTGTGCAGN

GGAGGCCCGGCGGCCCCTGGCCTCGCACAAAGTGACACTAAGAACATCGC
GAAAACAAATAGTTCGCGCCACCACAATTTTCTCTTCGTCGTTTTCCTTT
TTCCCTCGTTTCTTTTTTCGTTTCGTTTTTCTTACGCCCCACAACCCCAC
CAAAACCAAAAACACCCAAAACAAACCCAACACCAACCACCCCCCCCACC
AACACCCCCCCCCCACACCCAACACCCCAACCACACAAACACAAACCCCC
CCCCCACCCCCCCCCCCCCCCCCCCAACCCACCCCCACCCCACCCCCCCA
CCCCCCCCCCCACCCCAACCCCACCCCCCCCACACCCCCCCCCACACACC
CCCACCACCCCCCCCAACAACACACCCCCCCCCCCCCACCACACAAACCA
CACCCCCACCCCCACCCCCACACACCACAACAACCACACCCAAAACCACC
CCACACCAACACCAACCCCCCCCCACCCCCTCACCAAAACACCCCCCCCC
CCCCACCCCCCCCCCCCCCCACACCCCCCCCAACCCCCCACCCAAAAAAA
CACCCACAAACCACAACCACCCCACAACACACCCCCCCCACACCACCCAC
CCCCACCACCACCCACCCACCCCCCCCACCCCCACAAACCCCCACAACCC
CACCACCACCCCAAACACACAAACCACCCACACCCCCCACCAACCCCCAC
ACCCCACCCCCCACCCCACACACCCCCCCCCCCCCCCCCCCACCCCTCCA
CCCAAACCACCATACCAACCCCACCCAN

Query= MSMg01no165_b24.b1 MSMg01no165_b24.b1 CHROMAT_FILE:
MSMg01no165_b24.b1 PHD_FILE: MSMg01no165_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:10 2005
         (688 letters)



>mm_chr5_38512140_38513226
          Length = 1087

 Score = 1311 bits (678), Expect = 0.0
 Identities = 684/686 (99%), Gaps = 1/686 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctactccttttgaccgtcttcatatgcctgcttcttcagctgcctgttctgacta 62
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctactccttttgat-gtcttcatatgcctgcttcttcagctgcctgttctgacta 261

                                                                       
Query: 63  aatagtggcttcctatttttgtccactttactgtttcctttcttaacagaaaagcctttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatagtggcttcctatttttgtccactttactgtttcctttcttaacagaaaagcctttg 321

                                                                       
Query: 123 gctgaatcacagcccgaactgggaacctggggcgatggcaagggtgaagatgagctgtct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gctgaatcacagcccgaactgggaacctggggcgatggcaagggtgaagatgagctgtct 381

                                                                       
Query: 183 ccagaagagatacagatggtaatcctaactgcttccctttaactgcctgtcctaagactt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccagaagagatacagatggtaatcctaactgcttccctttaactgcctgtcctaagactt 441

                                                                       
Query: 243 tgaataagtgggaggttgtgcaaatgtccttttcctaatttgatactgagctttaaaagt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaataagtgggaggttgtgcaaatgtccttttcctaatttgatactgagctttaaaagt 501

                                                                       
Query: 303 ataaacacattttagatacacttacccacttaatatcctacttcctgttaggcttttcat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ataaacacattttagatacacttacccacttaatatcctacttcctgttaggcttttcat 561

                                                                       
Query: 363 gatgtcaattcacggtagcataatttcaacagaagttagcttggatggtcttgctaagcg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gatgtcaattcacggtagcataatttcaacagaagttagcttggatggtcttgctaagcg 621

                                                                       
Query: 423 tcttcaccagcaggatgctaggcatccattttaaatgtgtctcttatgtttgcaaagatg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcttcaccagcaggatgctaggcatccattttaaatgtgtctcttatgtttgcaaagatg 681

                                                                       
Query: 483 gtgcatatactcagttgagtctctggagtcatagaaatagaaagaaacatggtgatggct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtgcatatactcagttgagtctctggagtcatagaaatagaaagaaacatggtgatggct 741

                                                                       
Query: 543 gaaggatgacaggaacaaccatcaggacaatgatgacctcctggtgacctgtcccttgtg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaaggatgacaggaacaaccatcaggacaatgatgacctcctggtgacctgtcccttgtg 801

                                                                       
Query: 603 ctaagtgctattatttgtcttttctgagtggtttccggggacaaagttttggtgatagct 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctaagtgctattatttgtcttttctgagtggtttccggggacaaagttttggtgatagct 861

                                     
Query: 663 tcccaaacggcagcctcctggctgtg 688
           ||||||||||||||||||||||||||
Sbjct: 862 tcccaaacggcagcctcctggctgtg 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1087
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1077
Effective search space:   730206
Effective search space used:   730206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)