BAC Information

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BAC

Clone NameMSMg01-166F12
Chromosome5 (Build37)
Map Location 63,489,793 - 63,490,125
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166F12.T7 (MSMg01no166_f12.b1)MSMg01-166F12.TJ (MSMg01no166_f12.g1)
ACCAG364199AG364200
length778745
length of high quality
(start - end)
341 (47 - 387)187 (77 - 263)
definitionCHROMAT_FILE: MSMg01no166_f12.b1 PHD_FILE: MSMg01no166_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:49 2005CHROMAT_FILE: MSMg01no166_f12.g1 PHD_FILE: MSMg01no166_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTAGGAACCGTCATGCTTTGTTCTTTCTTATCACTCATTTAGA
CCTTGATAAGTCCACAGTTCAGGAAAAAAAGGGTTAGGCCACCTAGAGTT
ATCCCTGGGAATGGAGAGATAGCTCAAGAGTTAAGAGTTCTTATTGTTCT
CAGAGAACCTGGGCTCATTGTTTTGTAGGTATGTGGCTCCTCTGGGCTTC
TTGAATGCTTGCACACATGTGGTGCACAGAAACTCATGTAGGCTCAAAAA
CACACACACAAATTAATAATTATAATAAATATAATCTTTAAAATGACTAT
ATGATTACTTATCACAGCCCTCAATTTCTTTCATAACACTGAGAAAATGG
TTTATTTATTTCTCGCCTCCCCCATTGGGTTTCAGCATTTGTTATAGTAT
AATTTCCAGGCGGGCCGTTTGCTTCCTCCCTGTTCAAAAACTCTCAGTAT
TTCGCGAACCCTATTTTGCTTGTAATAACTCAGAACCCTCTAAGCCAACT
TTTTTCTTGCACCGTTTGTTTGACCCTTATTACCGCTATTTCTTTTACCC
GTCACCCGTTTTCCAGTGCTTCTTCACCATTTTCTCCCTCCCCCCCCCTC
TTTTTTTTTCCCCCCCTTACCCCGCTTTCATTTTCCCCCCATTTTTTCTG
TTTCCCCCTTCTCTCCGCCTTCCCCTCTCTTTGTTCACCCCTTCCCTTTA
TTTTTTTTCCCCTCCTTTTTTTCCCGCC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGGTAAAGGGGAAGAATGATG
GTAGGAGCCAGAAGGGTCAAGGACACCACAAGAAAACACATAGAATAAAC
AAGCTTGGACCCATAGGGGCTCTCTGCTGAACCAACAATTAGTGAGTCTG
CATAGGTCATGTGTTATTTATGTGAGTGGGTTAACTCTAAAGAGCACATG
TGGGGATAAGTGGTTGGAGGTGTTTTGTGTTCCCCAGCAAAGCCTGTCCT
GACCTGCGTCGGCTTTTTTCTTACTCTTACAATATCCTTCGAAACATGAA
TAACAGCGTTCTTTCTCACCCCTATCTGCCTCGCTCTAGCTCTGTCAATG
AGTTCCATTTTGCCCCCCCCCATAAATTCATATGATTTAATATAAGCTTT
CTTTCGTCCACCACCTAGTACCTGAACTACTAAAGACCCCCAATTCTGGT
CTGTTACTGCCTACAGTAGCTCAACATGGTAGCAATTTTTCTTATTTCCT
ATAATTCCACTTTCCTCACCCTGCTCATCATGATTAAATATCTCTGTCCT
GTTGGGTCAGTTTTTGCTTATTATATTACCCTAATCAACATAACTTTGTC
TGCTACCCCGAGCTTTTTATGTTTCATTTCTTACCTACCTATGCTCTAAT
TTCATTTTTTTCTCCTATCTCTCCATTCGTGGCGTTCTTAGGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_f12.b1 MSMg01no166_f12.b1 CHROMAT_FILE:
MSMg01no166_f12.b1 PHD_FILE: MSMg01no166_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:49 2005
         (341 letters)



>mm_chr5_63489589_63490329
          Length = 741

 Score =  613 bits (317), Expect = e-180
 Identities = 329/333 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaggaaccgtcatgctttgttctttcttatcactcatttagaccttgataag 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaggaaatgtcatgctttgttctttcttatcactcatttagaccttgataag 264

                                                                       
Query: 65  tccacagttcaggaaaaaaagggttaggccacctagagttatccctgggaatggagagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccacagttcaggaaaaaaagggttaggccacctagagttatccctgggaatggagagat 324

                                                                       
Query: 125 agctcaagagttaagagttcttattgttctcagagaacctgggctcattgttttgtaggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agctcaagagttaagagttcttattgttctcagagaacctgggctcattgttttgtaggt 384

                                                                       
Query: 185 atgtggctcctctgggcttcttgaatgcttgcacacatgtggtgcacagaaactcatgta 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 atgtggctcctctgggcttcttgaatgcttgcacacatgcggtgcacagaaactcatgta 444

                                                                       
Query: 245 ggctcaaaaacacacacacaaattaataattataataaatataatctttaaaatgactat 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcacaaaaacacacacacaaattaataattataataaatataatctttaaaatgactat 504

                                            
Query: 305 atgattacttatcacagccctcaatttctttca 337
           |||||||||||||||||||||||||||||||||
Sbjct: 505 atgattacttatcacagccctcaatttctttca 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)