BAC Information

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BAC

Clone NameMSMg01-166H20
Chromosome5 (Build37)
Map Location 145,840,667 - 145,841,031
singlet/doubletsinglet
Overlap genenone
Upstream geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik
Downstream geneArpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H20.T7 (MSMg01no166_h20.b1)MSMg01-166H20.TJ (MSMg01no166_h20.g1)
ACCAG364299AG364300
length747770
length of high quality
(start - end)		372 (45 - 416)340 (78 - 417)
definitionCHROMAT_FILE: MSMg01no166_h20.b1 PHD_FILE: MSMg01no166_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:00 2005CHROMAT_FILE: MSMg01no166_h20.g1 PHD_FILE: MSMg01no166_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCAAAGAGAGTACCATTGAGTTAGCCAGTGCTTACTTGTTAGACT
TCTGCAATGACACCAATTTAGTATCCAAAATGAGAAGTCTGCCTGTGAAA
AAATTAGTTGTCAGGGTAGATGGTGCACTGGCTTCTCATCACTTTTATAA
AACACTTGAGATTATCAACGTATAAAGGGAAAAGTTTGGGCTGGAGAGAT
GGCTCAGTTTAAAAAGCACTTGCAGGGCTGGAGAGATGGCTCAGCGGTTA
AGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCA
CATGGTGGCTCAAAGCCATCTGTAATGGGATCTGATGCCCTCTTCTGGTG
TGTCTGAAGACAGCTATTCCCCCCCCACATATACTAAATAAATGAATAAA
CGAATAAATAAATGGATAAATATCTTTAAAAAGCACTCACCATACAACTC
TGAGTTCACATCCTCAGACCCCACACAAAGCCAATGTAGCCACATCTATA
ATGGTTCTGCGCTTATGGTTGGATGCCAGAGCCACTCCGTTTCCCCTTAC
ACTTTATCGCCCTTTTTTCCTGTTGTGCCCCTGCCACCACTAATTAACCC
CCCCTTCTCCCCATTTTTATCCCCCTTACTGTTTTCCCATTTTTTACTTT
CCCCTTTTTTACAACCCACCTTTTTACATGCCCCCCATATTCTCCCC

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCG
GGGTGTAATAGTGGGATGATGGGCAAGCAACGAATCGGGAGCTGCCACGC
CATATCAGGTGCTGAAACGTCATGCTGCGGGTTATAAAAGCAGCGCCATT
TTCCCGGTTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGCG
GAAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGGACGCAATA
AGTGGCGCCGAAGAACCCGGGAACTGTCATCACACCGGCGCAAGGAAGAT
CCCTCGTTCGCGGGGCAGAATCAGAACCGTGGGACAAAAGGCTCTACAAG
GTACGTACAATCTTGAACCCCCCCCAGAGTTAGAAGCCCTTTTGATTGTT
TGCATGGCGATTATGAGGACTGTCAGCAAATGGTAGAAGCGGGGCAGAAA
GTTCTGGACGAAATTCTAGAAAGTCTATCAGAGCTATAGCGTTTACAGAA
TGCTATAGTTGAGAGGATACTCACGGCACTGAACATTTTATCCCTTTTCT
CGTCCTCCTGTACTCTATGAATATACTATGTCTGTCTAATATACCTGGTT
TACCCTCTCTACCTCGGTTGTTGTCCCTTACATATCTATTATCTCCCATG
CATCATAGTTTCCGTATATATACCTTGTTCTTATTTCCGTCGTCGTGATT
CAATACTCCACTTCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h20.b1 MSMg01no166_h20.b1 CHROMAT_FILE:
MSMg01no166_h20.b1 PHD_FILE: MSMg01no166_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:00 2005
         (372 letters)



>mm_chr5_145840638_145841410
          Length = 773

 Score =  667 bits (345), Expect = 0.0
 Identities = 360/365 (98%), Gaps = 1/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattccaaagagagt-accattgagttagccagtgcttacttgttagacttctgcaat 64
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggaattccaaagagagtaagcattgagttagccagtgcttacttgttagacttctgcaat 335

                                                                       
Query: 65  gacaccaatttagtatccaaaatgagaagtctgcctgtgaaaaaattagttgtcagggta 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 334 gacaccaatttagtatccaaaatgagaagtctgtctgtgaaaaaattagttgtcagggta 275

                                                                       
Query: 125 gatggtgcactggcttctcatcacttttataaaacacttgagattatcaacgtataaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gatggtgcactggcttctcatcacttttataaaacacttgagattatcaacgtataaagg 215

                                                                       
Query: 185 gaaaagtttgggctggagagatggctcagtttaaaaagcacttgcagggctggagagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaaaagtttgggctggagagatggctcagtttaaaaagcacttgcagggctggagagatg 155

                                                                       
Query: 245 gctcagcggttaagagcactgactgctcttccagaggtcctgagttcaattcccagcaac 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 154 gctcagcggttaagagcactgactgctcttccagaggtcccgagttcaattcccagcaac 95

                                                                       
Query: 305 cacatggtggctcaaagccatctgtaatgggatctgatgccctcttctggtgtgtctgaa 364
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  tacatggtggctcaaagccatctgtaatgggatctgatgccctcttctggtgtgtctgaa 35

                
Query: 365 gacag 369
           |||||
Sbjct: 34  gacag 30



 Score =  215 bits (111), Expect = 4e-60
 Identities = 135/143 (94%), Gaps = 4/143 (2%)
 Strand = Plus / Plus

                                                                       
Query: 232 ggctggagagatggctcagcggtt-aagagcactgactgctcttccagaggtcctgagtt 290
           |||||||||||||| |||| |||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 562 ggctggagagatgggtcagtggttaaag-gcactgactgctcttccaggggtcctgagtt 620

                                                                       
Query: 291 caattcccagcaaccacatggtggctca-aagccatctgtaatgggatctgatgccctct 349
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 621 caattcccagcaaccacatggtggctcacaa-ccatctgtaatgggatctgatgccctct 679

                                  
Query: 350 tctggtgtgtctgaagacagcta 372
           ||||| |||||||||||||||||
Sbjct: 680 tctggggtgtctgaagacagcta 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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