Query= MSMg01no166_p01.b1 MSMg01no166_p01.b1 CHROMAT_FILE:
MSMg01no166_p01.b1 PHD_FILE: MSMg01no166_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:34 2005
(377 letters)
>mm_chr5_54090040_54090816
Length = 777
Score = 675 bits (349), Expect = 0.0
Identities = 364/369 (98%)
Strand = Plus / Minus
Query: 5 gaattctggtcctcttcacgcctacttctcacacatactacagctacacaccttctcatg 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattctggtcctccccatgcctacttctcacacatactacagctacacaccttctcatg 514
Query: 65 gccaccaatgacatgtgaccacgcacgcgcacacacctcctctggcctcttctgaataag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gccaccaatgacatgtgaccacgcacgcgcacacacctcctctggcctcttctgaataag 454
Query: 125 ggagaagtctgacaaattttaaaagcttgaggttgtacaagtatactcaggggtgaaagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggagaagtctgacaaattttaaaagcttgaggttgtacaagtatactcaggggtgaaagg 394
Query: 185 ttgaggttgtcatcagaaatacatgaagaatgtgtctaaaagacaggtgttaggattttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttgaggttgtcatcagaaatacatgaagaatgtgtctaaaagacaggtgttaggattttt 334
Query: 245 atttctacaaaggacagggtatgcgaggccagtagctataactgttttctgtcagcaatg 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 333 atttctacaaaggacagggtatgcgaggccagtagctagaactgttttctgtcagcaatg 274
Query: 305 tcaagctgcagaaggatgatctctacagcataatctctcctctgaagctaatccccacaa 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 273 tcaagctgcagaaggatgatctctacagtataatctctcctctgaagctaatccccacaa 214
Query: 365 ccttttttt 373
|||||||||
Sbjct: 213 ccttttttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space: 282624
Effective search space used: 282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_p01.g1 MSMg01no166_p01.g1 CHROMAT_FILE:
MSMg01no166_p01.g1 PHD_FILE: MSMg01no166_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:35 2005
(294 letters)
>mm_chr5_53989784_53990480
Length = 697
Score = 551 bits (285), Expect = e-161
Identities = 293/297 (98%), Gaps = 3/297 (1%)
Strand = Plus / Plus
Query: 1 tacagagtcaattttctacttaaatgatacatgtataaacttactcttggattatattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagagtcaattttctacttaaatgatacatgtataaacttactcttggattatattca 260
Query: 61 ccattctgcatttctggactggactgtttgaaatggaacatgaaacttatcaaataaaaa 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattctgcatttctggactgtactgtttgaaatggaacatgaaacttatcaaataaaaa 320
Query: 121 accctgagttagttaaagtagaaaatggaacatagaaatggactatgttccatagataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accctgagttagttaaagtagaaaatggaacatagaaatggactatgttccatagataca 380
Query: 181 gccttttgcaggaggcttttgttgttgttgttgttg---ggtagactgtggattgcttta 237
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gccttttgcaggaggcttttgttgttgttgttgttgttgggtagactgtggattgcttta 440
Query: 238 aaggaggagagtgagctagcgtgtttcttggagaatttgttggaaggtgaagaagtg 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggaggagagtgagctagcgtgtttcttggagaatttgttggaaggtgaagaagtg 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 697
Length adjustment: 9
Effective length of query: 285
Effective length of database: 688
Effective search space: 196080
Effective search space used: 196080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
