BAC Information

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BAC

Clone NameMSMg01-166P02
Chromosome5 (Build37)
Map Location 87,207,482 - 87,207,707
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166P02.T7 (MSMg01no166_p02.b1)MSMg01-166P02.TJ (MSMg01no166_p02.g1)
ACCAG364605AG364606
length730735
length of high quality
(start - end)
---595 (77 - 671)
definitionCHROMAT_FILE: MSMg01no166_p02.b1 PHD_FILE: MSMg01no166_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:35 2005CHROMAT_FILE: MSMg01no166_p02.g1 PHD_FILE: MSMg01no166_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCCGCCAAACGAGNCACAAATTTTCGAAACCGCACGGAA
ANCAANCCANGGTTTCCCGCAGCGAGAGAAACNAACAGAAAGGCACACCG
AGGACAGACACCNCAGAGAGGCACCCCGGGACCNNCAACAAAAGAANACC
AGAAAGCCAAAAAGCAAAACAAACCCAAGGNNAAGGCCAACGGGAACCNA
AANCNAANCCGAAGANGGCAACCCAAGGAGACACGCGAGCCCAGAAAAGG
CAGAAGTATTTCAGACACCGGCGGCACCGACAAAAGCAAAACAAAGAACG
ACACCAACCGAAACACGAACATTTTTTTTTTTATACACGAGAAAAAGGAA
ACACGCACAAGGGCAAACACCCCCACCCACACNAACCCCGGAAAAAGCAA
GCAAGCCAANGACGAAAGCACCCCCGCAGAAGCCACAGAAAAACCACAAC
ACAGAGAACGACCAACCGGACCCGCGACACAAACAAGCCACCGCAAAAAC
CCCCCACAAAACCAAGCCCAAGACACACCGCCCCAAACCCGAGAAAACCA
CCGCCACAAAAAGAAACCCAACCAAACGCGCAGCCAAAAGCCCAACACAA
GAACACCGGAGCACCCCAAAACGCCCACCGCCCCAAAAAAACCCGCCCCA
ACCCCAACCAAAACCCCTTTTTCTTATCCCTAACCCCCTACCCATTTACC
CCCCTCCTTTTTTTTCCCCCCTTTTCCTCC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTGCTTGTGGAAACCCTCCAA
GAAAACTCGACAAAAGTCTTGTGACTAGATTTCTTCAAAACACAGAAATG
TTCCTGGAATGTGTTTTCATGTGTCTTCCAGACACAGCAGAAAGGAGTGG
CTTTATTTCAGATTGCTTGTTACTGCTTGCTATTGATAATCAGCTAAATA
AACTGTCCTTTGTGTGTTTCTCTAGAAACACATGTTTTTCTCATGCTCAG
CTCTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGG
ATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCA
GACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATT
CTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCC
ACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAAC
CTGCCAACCAAAGCGAGAACAAAACATAACATCAAACGAATCGACCGATT
GTTAGGTAATCGTCACCTCCACAAAGAGCGACTCGCTGTATACCGTTGGC
ATGCTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGAACTTGCTGAC
TGGTCTGATATTCGTGAGCAAAAACGACTTATGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_p02.g1 MSMg01no166_p02.g1 CHROMAT_FILE:
MSMg01no166_p02.g1 PHD_FILE: MSMg01no166_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:35 2005
         (595 letters)



>mm_chr5_87207282_87208276
          Length = 995

 Score =  414 bits (214), Expect = e-119
 Identities = 223/226 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtgcttgtggaaaccctccaagaaaactcgacaaaagtcttgtgactagatttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taagtgcttgtggaaaccctccaagaaaactcgacaaaagtcttgtgactagatttcttc 367

                                                                       
Query: 61  aaaacacagaaatgttcctggaatgtgttttcatgtgtcttccagacacagcagaaagga 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 366 aaaacacagaaatgttcctggaatgtgttttcatgtgttttccagacacagcagaaagga 307

                                                                       
Query: 121 gtggctttatttcagattgcttgttactgcttgctattgataatcagctaaataaactgt 180
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 306 gtggctttatttcagattacttgttactgcttgctattgatagtcagctaaataaactgt 247

                                                         
Query: 181 cctttgtgtgtttctctagaaacacatgtttttctcatgctcagct 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cctttgtgtgtttctctagaaacacatgtttttctcatgctcagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)