BAC Information

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BAC

Clone NameMSMg01-167L04
Chromosome5 (Build37)
Map Location 9,569,229 - 9,569,355
singlet/doubletsinglet
Overlap geneGrm3
Upstream geneGm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167L04.T7 (MSMg01no167_l04.b1)MSMg01-167L04.TJ (MSMg01no167_l04.g1)
ACCAG365101AG365102
length727742
length of high quality
(start - end)
129 (362 - 490)422 (79 - 500)
definitionCHROMAT_FILE: MSMg01no167_l04.b1 PHD_FILE: MSMg01no167_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:32 2005CHROMAT_FILE: MSMg01no167_l04.g1 PHD_FILE: MSMg01no167_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCACAATTCGAACGGCGGCGCGGAATTCCTGCTT
TTCTGAACGTATGATTTAAGCATATAAACTTCCAGTTCTTGGGTGAAGAA
CTGAAATTGCCTGTGCAGACCAGAATCATTGCTGGATGACATAGGGGACT
TTCAACAGTGTAGGCATGTAAGTACCTTGGATCACTGTAGTAAATGCTTA
CAACTTTATGATTTGGCTTTAAGTCCTGCGAGCCATATATTGTCACTGAG
CTGATACTACATGTGAGAATGCAAACCTAAAGTCTGTGTTTTTAATGTTA
ATTTTGTAATTTTGAATTTAGAAATATTTATGCCATATTTGGAATTATGT
TAACCACAGCAGAATTCATTTTGCAGGCACTTGCATAGTTACTTTTGACC
ACAATTACTCCAGTCTTCAATTTGCTTCTATTAAGGATCACAGAGAAAGT
TGTGTTTTATAATATAATTTGAGAGAACCCACAACTTCGAAGACCCCAAG
GGAATATTTCTGTATAAACAGAATAAATAAACCACAGTGCTTGGGAGTCA
CCATGGGCTGGTTGCCTTTCCTATTCTGTCCCTAATTAGGCTCTGGGAAA
AGTGACTTTTTCTCACCCACTGTGACAGTTATGAGACTCTTTTGCTTTTA
TCCCTCCCAAGGAGAGCTTATAATTCATGTTCCTTACACAGGTGCCAANT
TCCGCAGCAGAAGATTAAATGCCCCTA
NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTATCACTTCATTTCAAGAGA
TATTTATTTTTTAAATTTACATATCTGTCCTTTTTATTGGTTTATTTATT
TACTCAAATGTTGTCCCCCTTCCTGGTTTCCCCTCCACAAATCCCCTATC
CCATCCCCCCCCACCTTCTATGAGGGTGCTACCCCATCTACCTACCCACT
CCTGCTTCAATGCCCTAGCATTCCCCTATGCTGGGGCATTTAGCCTCCAC
AGGACTAAGGACCTACTCTCCCAATGATGCTCAACAAGGCCATCCTCTGA
AATATATGCAGCTGGAGCCATGGGTCCCTCCGTGTGTACCCTTTGGTTGG
TGGTTTAGTCCCTGGGTGTCAGGCCGGCTGATATTGTTGTTCTTCCTATT
AGGTTGCAAACCCTGCAGCTCCTTCAGTCCTTCCCCTAACTCTTTCATTG
TGATCCCCATGATCAGTCCAATGGTTGGCCGTGAGCATCCACATCTGTAT
TAGTCACGTTTCTGGCAGAGACTCTTCTTGGACAGCTATACCAGGCTCCT
GTCATCTAACACTTCTTGGACTTTTCAAAAGTGTCTTGGCTTTATTATTT
GTTTTTTTTGAATGGATTCTTTACAAGTGATACATCTCCGGATTGTCCAT
TTCGATATCAATCTCCTGCATCCTGTTACTTTGTGCCACTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_l04.b1 MSMg01no167_l04.b1 CHROMAT_FILE:
MSMg01no167_l04.b1 PHD_FILE: MSMg01no167_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:32 2005
         (129 letters)



>mm_chr5_9569029_9569557
          Length = 529

 Score =  230 bits (119), Expect = 2e-65
 Identities = 125/127 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcattttgcaggcacttgcatagttacttttgaccacaattactccagtcttcaat 60
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 201 gaattcattttgcaggcacttgcatagttacctttgaccagaattactccagtcttcaat 260

                                                                       
Query: 61  ttgcttctattaaggatcacagagaaagttgtgttttataatataatttgagagaaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcttctattaaggatcacagagaaagttgtgttttataatataatttgagagaaccca 320

                  
Query: 121 caacttc 127
           |||||||
Sbjct: 321 caacttc 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)