Query= MSMg01no167_l14.b1 MSMg01no167_l14.b1 CHROMAT_FILE:
MSMg01no167_l14.b1 PHD_FILE: MSMg01no167_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:34 2005
(487 letters)
>mm_chr5_36257323_36258209
Length = 887
Score = 830 bits (429), Expect = 0.0
Identities = 468/481 (97%)
Strand = Plus / Minus
Query: 7 ggaattcaggccatacctaagccctgttccaagcaccccaagacagcttctggcagctgc 66
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggaattcaggccaaatctaagccctgttccaagcaccccaagacagcttctggcagctgc 491
Query: 67 tgtgaggtacaggaaacccatgttgaaaggagaggcctgtcctgcctccttgagggacag 126
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgtgaggcacaggaaaaccatgttgaaaggagaggcctgtcctgcctccttgagggacag 431
Query: 127 aagataagatcttgggtttttaaaatctgtaagaaatcaccattgccattaatagcaacg 186
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aagataagatcttgggttttaaaaatctgtaagaaatcaccattgccattaatagcaaca 371
Query: 187 gggcgagacaagatcagagtggttcatgagaggcctggaggactccaacacctacttcct 246
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 370 gggcgagacaagatcagagtggttcatgagaggcctggaggactccaacacccacttcct 311
Query: 247 ccactgcctcctcacccctccaagcagccactctgaaaagagagattgagcagaagagcc 306
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 310 ccactgcctcctcacccctccaagcagccactctgaaaagagagattcagcagaagagcc 251
Query: 307 gtcctttttctaatgcctttgatattgtaagaaatagatagcgtgggctggtgaaatggc 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 250 atcctttttctaatgcctttgatattgtaagaaatagatagcgtgggctggtgaaatagc 191
Query: 367 tcagcgcctaagagcactgactgttgttcccaaggtcctgagttcaaatcccagcaacca 426
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcagcggttaagagcactgaatgttgttcccaaggtcctgagttcaaatcccagcaacca 131
Query: 427 tatgatggctcacaaccatctgtaatgtgatctgacaccctcttctggtgtgtctgaaga 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatgatggctcacaaccatctgtaatgtgatctgacaccctcttctggtgtgtctgaaga 71
Query: 487 c 487
|
Sbjct: 70 c 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_l14.g1 MSMg01no167_l14.g1 CHROMAT_FILE:
MSMg01no167_l14.g1 PHD_FILE: MSMg01no167_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:34 2005
(343 letters)
>mm_chr5_36085277_36086018
Length = 742
Score = 627 bits (324), Expect = 0.0
Identities = 338/346 (97%), Gaps = 7/346 (2%)
Strand = Plus / Plus
Query: 1 cagtacagccagagagagaccttgtttcaaaacaaacaaaacaaaacaaaacaaaaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtacagccagagagagaccttgtttcaaaacaaacaaaacaaaacaaaacaaaaatat 260
Query: 61 gtaaaaacatgtccacttttttctgcccaggttttgcccccaaagtgctggtcaggacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaaaacatgtccacttttttctgcccaggttttgcccccaaagtgctggtcaggacac 320
Query: 121 tccagttgtctgtgctgctcctggggacagcctttcagctgctgctacccacctgaggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagttgtctgtgctgctcctggggacagcctttcagctgctgctacccacctgaggtg 380
Query: 181 gacccagacccc---tgcatcactgatccagagagtcactatgtccttcacaagttcctc 237
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gacccagaccccacctgcatcactgatccagagagtcactatgtc----acaagttcctc 436
Query: 238 tcccagtcacctctgttcctatctctagcctgcttgcttctttgagggacatttatgctg 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcccactcacctctgttcctatctctagcctgcttgcttctttgagggacatttatgctg 496
Query: 298 cccagagtcagtatcccagtctgaagaggatggtcctgtcctggtc 343
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cccagagtcagtatcccagtctgaagaggatggtcctgtcctggtc 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space: 244822
Effective search space used: 244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|