BAC Information

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BAC

Clone NameMSMg01-167L14
Chromosome5 (Build37)
Map Location 36,085,477 - 36,257,872
singlet/doubletdoublet
Overlap geneAblim2, Afap1, LOC100040209
Upstream geneGprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1
Downstream geneSorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167L14.T7 (MSMg01no167_l14.b1)MSMg01-167L14.TJ (MSMg01no167_l14.g1)
ACCAG365119AG365120
length699727
length of high quality
(start - end)
487 (19 - 505)343 (76 - 418)
definitionCHROMAT_FILE: MSMg01no167_l14.b1 PHD_FILE: MSMg01no167_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:34 2005CHROMAT_FILE: MSMg01no167_l14.g1 PHD_FILE: MSMg01no167_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,257,392 - 36,257,872)(36,085,477 - 36,085,818)
sequence
ACTCACTATTCGAAGAGGATCCGCGGAATTCAGGCCATACCTAAGCCCTG
TTCCAAGCACCCCAAGACAGCTTCTGGCAGCTGCTGTGAGGTACAGGAAA
CCCATGTTGAAAGGAGAGGCCTGTCCTGCCTCCTTGAGGGACAGAAGATA
AGATCTTGGGTTTTTAAAATCTGTAAGAAATCACCATTGCCATTAATAGC
AACGGGGCGAGACAAGATCAGAGTGGTTCATGAGAGGCCTGGAGGACTCC
AACACCTACTTCCTCCACTGCCTCCTCACCCCTCCAAGCAGCCACTCTGA
AAAGAGAGATTGAGCAGAAGAGCCGTCCTTTTTCTAATGCCTTTGATATT
GTAAGAAATAGATAGCGTGGGCTGGTGAAATGGCTCAGCGCCTAAGAGCA
CTGACTGTTGTTCCCAAGGTCCTGAGTTCAAATCCCAGCAACCATATGAT
GGCTCACAACCATCTGTAATGTGATCTGACACCCTCTTCTGGTGTGTCTG
AAGACAGCTACAGTGTACGTACGTATAACAATAAATAAATCTTTGGGCCA
GAGCAAGCTGGGTTGGAGCGAGTATAGGCCCTGAGTTCAATTCCCAGTCA
ATCACATGATGGATCCCAACCATCTGTACTGCTACTGTGTATTTTTATAC
ATATACATAACCCACCACTTCTTTTCTTATAAAGAAACGGGATCTAGCG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTACAGCCAGAGAGAGACCTTGT
TTCAAAACAAACAAAACAAAACAAAACAAAAATATGTAAAAACATGTCCA
CTTTTTTCTGCCCAGGTTTTGCCCCCAAAGTGCTGGTCAGGACACTCCAG
TTGTCTGTGCTGCTCCTGGGGACAGCCTTTCAGCTGCTGCTACCCACCTG
AGGTGGACCCAGACCCCTGCATCACTGATCCAGAGAGTCACTATGTCCTT
CACAAGTTCCTCTCCCAGTCACCTCTGTTCCTATCTCTAGCCTGCTTGCT
TCTTTGAGGGACATTTATGCTGCCCAGAGTCAGTATCCCAGTCTGAAGAG
GATGGTCCTGTCCTGGTCCCCCACGTCTGTCCAAGTGGACAGACTGGAAG
AAAAACAGGTGCCTAGACTGAGAAGGCCTGGGACAAGGCTAGACCCCCTC
TACTGAGAACAAACTCCTTCAAGTTGCCCTCTGACTCCACACCTTGTGCA
GTCACACATGGACAGAACTCATATCTATGACCGAGCGGACTTGATAAAGG
TTGAAGGATGTATACAGGCTGCTTGACGACCTAAGACTATAATTCTTTGT
TTTTTTCTCCTCTTTCATGACCCAGCCACTATTGATTCTAAACACCGTGA
CCTCAATCTGTGTCTTTTTTTCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_l14.b1 MSMg01no167_l14.b1 CHROMAT_FILE:
MSMg01no167_l14.b1 PHD_FILE: MSMg01no167_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:34 2005
         (487 letters)



>mm_chr5_36257323_36258209
          Length = 887

 Score =  830 bits (429), Expect = 0.0
 Identities = 468/481 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattcaggccatacctaagccctgttccaagcaccccaagacagcttctggcagctgc 66
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggaattcaggccaaatctaagccctgttccaagcaccccaagacagcttctggcagctgc 491

                                                                       
Query: 67  tgtgaggtacaggaaacccatgttgaaaggagaggcctgtcctgcctccttgagggacag 126
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgtgaggcacaggaaaaccatgttgaaaggagaggcctgtcctgcctccttgagggacag 431

                                                                       
Query: 127 aagataagatcttgggtttttaaaatctgtaagaaatcaccattgccattaatagcaacg 186
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 430 aagataagatcttgggttttaaaaatctgtaagaaatcaccattgccattaatagcaaca 371

                                                                       
Query: 187 gggcgagacaagatcagagtggttcatgagaggcctggaggactccaacacctacttcct 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 370 gggcgagacaagatcagagtggttcatgagaggcctggaggactccaacacccacttcct 311

                                                                       
Query: 247 ccactgcctcctcacccctccaagcagccactctgaaaagagagattgagcagaagagcc 306
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 310 ccactgcctcctcacccctccaagcagccactctgaaaagagagattcagcagaagagcc 251

                                                                       
Query: 307 gtcctttttctaatgcctttgatattgtaagaaatagatagcgtgggctggtgaaatggc 366
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 250 atcctttttctaatgcctttgatattgtaagaaatagatagcgtgggctggtgaaatagc 191

                                                                       
Query: 367 tcagcgcctaagagcactgactgttgttcccaaggtcctgagttcaaatcccagcaacca 426
           ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcagcggttaagagcactgaatgttgttcccaaggtcctgagttcaaatcccagcaacca 131

                                                                       
Query: 427 tatgatggctcacaaccatctgtaatgtgatctgacaccctcttctggtgtgtctgaaga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tatgatggctcacaaccatctgtaatgtgatctgacaccctcttctggtgtgtctgaaga 71

            
Query: 487 c 487
           |
Sbjct: 70  c 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no167_l14.g1 MSMg01no167_l14.g1 CHROMAT_FILE:
MSMg01no167_l14.g1 PHD_FILE: MSMg01no167_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:34 2005
         (343 letters)



>mm_chr5_36085277_36086018
          Length = 742

 Score =  627 bits (324), Expect = 0.0
 Identities = 338/346 (97%), Gaps = 7/346 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtacagccagagagagaccttgtttcaaaacaaacaaaacaaaacaaaacaaaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtacagccagagagagaccttgtttcaaaacaaacaaaacaaaacaaaacaaaaatat 260

                                                                       
Query: 61  gtaaaaacatgtccacttttttctgcccaggttttgcccccaaagtgctggtcaggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaaaacatgtccacttttttctgcccaggttttgcccccaaagtgctggtcaggacac 320

                                                                       
Query: 121 tccagttgtctgtgctgctcctggggacagcctttcagctgctgctacccacctgaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagttgtctgtgctgctcctggggacagcctttcagctgctgctacccacctgaggtg 380

                                                                       
Query: 181 gacccagacccc---tgcatcactgatccagagagtcactatgtccttcacaagttcctc 237
           ||||||||||||   ||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 381 gacccagaccccacctgcatcactgatccagagagtcactatgtc----acaagttcctc 436

                                                                       
Query: 238 tcccagtcacctctgttcctatctctagcctgcttgcttctttgagggacatttatgctg 297
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcccactcacctctgttcctatctctagcctgcttgcttctttgagggacatttatgctg 496

                                                         
Query: 298 cccagagtcagtatcccagtctgaagaggatggtcctgtcctggtc 343
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cccagagtcagtatcccagtctgaagaggatggtcctgtcctggtc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space:   244822
Effective search space used:   244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)