BAC Information

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BAC

Clone NameMSMg01-168B23
Chromosome5 (Build37)
Map Location 131,561,778 - 131,714,820
singlet/doubletdoublet
Overlap geneWbscr17
Upstream geneTpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1
Downstream geneAuts2, 4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168B23.T7 (MSMg01no168_b23.b1)MSMg01-168B23.TJ (MSMg01no168_b23.g1)
ACCAG365407AG365408
length711711
length of high quality
(start - end)
318 (43 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no168_b23.b1 PHD_FILE: MSMg01no168_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:07 2005CHROMAT_FILE: MSMg01no168_b23.g1 PHD_FILE: MSMg01no168_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,561,778 - 131,562,089)(131,714,535 - 131,714,820)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACGTGAGCATCGAAAAAGCCAGTGACCTGGCCAGTGGCCGCTTTCCA
GCCCTCGATGCGTGCTCGGATCAGGCCTTCTCGCTTTTGATTGCGTACCA
CCTTCACCAGCCCAGGGTAGCGTTTGTGGACGTACTCTTCCAAGGGGGCC
TTCAGCTCCTCTGTAAATGACAAAATGCAAGAAACGCATGAATAAGTCAA
CTCAGATCTGTACCCCAAATGCTGTGAGGGGATTGAATATCTACATAGTA
CTAATGTAATAGCTAGGAGTACTAACACCTGGTGGAGAGTACCAGAGTTC
GGTTCTCATTTTTTTCAGACCCGCCCCCACAACCACCTGTAACTCCAGCT
CTAGGTGACCTGATGCTTTCTATTGAACTCTGAGGACATCTGCATGCATG
CACACATATTCACACAAACATATATGACGATATACAGATATGCATAGCTT
AAAAGTATTGAAAATAAACATTATAAAACACCAGAAAGTTCTTTGATTGC
AAAAAAAAAAAAAGTTGGTGTGTGAGGAATTTTAACTCTCTGTAAGATAG
GAAGTTAGAATACCTCTCCATACACAAATCTAAGACAGCTGTGCTATGAC
GCACATGGATGGTTAACACTGACTGTCAATTTAACAGGATCTAGAAACAT
TCAACAGGAGC
NCGTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAGACCCTTAGCTGGGCTTCCC
GTTTTTATGCAGCTGCAAGGGATCTTGGGAGATGCTAAGGTATCTAGGAA
GTGGAAGGTTAACTGAAGGGAAAACTATCATGCAGCTTTTCTGAGATCGC
TGTCTGTCACAGGGTGGGACTTTGTGCTGATGCAGCTGCTTTGGAGTCAC
CCACGCTCCTGTAGGTAGCCCCTTCCCCAAGCTCTGTACATAAACCCAAT
TAACTCATTTGTGGGCTGAGCTGGACTTTGATGGAGTAATTAGTTTGGTA
TGTCATCAGAGTTTTATTTGTGCCCCCCGCCCCCTTGCTCATATCTCCCC
AGGAAAAGGTAGTACTCACTTTCTCAAGAACCAGATTGTCCTTGCTGCCA
CTAATGGAAGCCACATCAGACCCTCACTGGTGATGGCTGCCTTGCCTTGG
GCTTCTTGGCCTGTCGACTGTGAGCCAAAAAAATCAAATATGTGTCTTTG
AAAAATCACTTACACCCAGCCATTCTATTATAGCAGTAGAAAACATACAA
AGGCCCACCCCATCTTGGCCTCCCCAAGGCTTGCTATGTTATTCCTAGAG
GGCGCATAGTTCTTCATTGACATGCACCCATTATAAGCCTGAACTTTACG
TGGTTTGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_b23.b1 MSMg01no168_b23.b1 CHROMAT_FILE:
MSMg01no168_b23.b1 PHD_FILE: MSMg01no168_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:07 2005
         (318 letters)



>mm_chr5_131561574_131562291
          Length = 718

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacgtgagcatcgaaaaagccagtgacctggccagtggccgctttccagccctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacgtgagcatcgaaaaagccagtgacctggccagtggccgctttccagccctc 264

                                                                       
Query: 65  gatgcgtgctcggatcaggccttctcgcttttgattgcgtaccaccttcaccagcccagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgcgtgctcggatcaggccttctcgcttttgattgcgtaccaccttcaccagcccagg 324

                                                                       
Query: 125 gtagcgtttgtggacgtactcttccaagggggccttcagctcctctgtaaatgacaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtagcgtttgtggacgtactcttccaagggggccttcagctcctctgtaaatgacaaaat 384

                                                                       
Query: 185 gcaagaaacgcatgaataagtcaactcagatctgtaccccaaatgctgtgaggggattga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaagaaacgcatgaataagtcaactcagatctgtaccccaaatgctgtgaggggattga 444

                                                                       
Query: 245 atatctacatagtactaatgtaatagctaggagtactaacacctggtggagagtaccaga 304
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 atatctacgtagtactaatgtaatagctaggaatactaacacctggtggagagtaccaga 504

                       
Query: 305 gttcggttctca 316
           ||||||||||||
Sbjct: 505 gttcggttctca 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no168_b23.g1 MSMg01no168_b23.g1 CHROMAT_FILE:
MSMg01no168_b23.g1 PHD_FILE: MSMg01no168_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:07 2005
         (287 letters)



>mm_chr5_131714515_131715201
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagacccttagctgggcttcccgtttttatgcagctgcaagggatcttgggagatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ataagacccttagctgggcttcccgtttttatgcagctgcaagggatcttgggagatgct 247

                                                                       
Query: 61  aaggtatctaggaagtggaaggttaactgaagggaaaactatcatgcagcttttctgaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 246 aaggtatctaggaagtggaaggttaactgaagggaaaactatcatgcagcttttgtgaga 187

                                                                       
Query: 121 tcgctgtctgtcacagggtgggactttgtgctgatgcagctgctttggagtcacccacgc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tcactgtctgtcacagggtgggactttgtgctgatgcagctgctttggagtcacccacgc 127

                                                                       
Query: 181 tcctgtaggtagccccttccccaagctctgtacataaacccaattaactcatttgtgggc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 126 tcctgtaggtagccccttccccaagctctgtacataaacccagttaactcatttgtgggc 67

                                                         
Query: 241 tgagctggactttgatggagtaattagtttggtatgtcatcagagt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tgagctggactttgatggagtaattagtttggtatgtcatcagagt 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)