BAC Information

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BAC

Clone NameMSMg01-168I14
Chromosome5 (Build37)
Map Location 78,931,458 - 78,931,806
singlet/doubletsinglet
Overlap genenone
Upstream genePea15b, LOC669227, LOC100039398, Mthfr-ps1
Downstream geneEG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168I14.T7 (MSMg01no168_i14.b1)MSMg01-168I14.TJ (MSMg01no168_i14.g1)
ACCAG365689AG365690
length1,1861,244
length of high quality
(start - end)
366 (29 - 394)376 (73 - 448)
definitionCHROMAT_FILE: MSMg01no168_i14.b1 PHD_FILE: MSMg01no168_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:50 2005CHROMAT_FILE: MSMg01no168_i14.g1 PHD_FILE: MSMg01no168_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTGCTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CACTTCATATGACACGTGAGAATATACTTCAATACATTATTATTACAAAT
AGATTCCTATTATTAAAACTATTTATCACCTAATGCCTCCAAGTAGGGAT
TACACAAATATACTGATATAAATCCACAGAGATATTTCCTAAGGAATGTG
GAAATGAGGGGACAATTGAATCCCTCATCTAAAATTACATGGCCTGAAAT
TTTCAAGAATAGCATTTTCTGGAGCAATGACATATTCCTTGAATTCCAGA
AGGAGTACCAAAAGGCATATTAAATATGTAAACACTTCATTTGTATACAT
TGTTTATGTGAATGAAAATAGACACATAGTTTGAAATGTGTATAATTTAT
AGGATGGGGCCTCAGTGCAGATCTGTGTCAAGCCTACTAAATTTTTTTTT
TTCCCCCCCCCCCCTGAAAGGNATTACCTTAAAAAAAAAAAGAGGTCTGA
GGGTTAAACCCAGCCCAAGGCCTGATTTTAAGAATAAAGTTTTAATAAAA
TGTAGTCATATCCATTAATTTGCACCACCCCCCTCTCTCTCTCTCCCCCC
TCACTCACACACTAACACACACTTTATATTCCTCAATGCCAGAATAGTTA
TGATGTAGACCATATGATCTGCCAAGTCTAACATGTTTATAGTCTGGTCT
TTTTCTTAAAGTTTACCTCCTTGTGCCTTTCCTAATTTGCTATTCTATGC
CATCAATATAATACTTTTATTTTCATCTTTTTGATTTTTTATTCTTCTTT
TTTTTTATCCTTTTTACAATTTATCTTATTTACTTTTATTTTATTATTAT
TTTTCTTTGTTCTTATCTTAGCTTTTATAATATTTTTCCTATTTAATTTT
ATCATTGTTCTATTATCCATTTCTTCATCTTTCTATCTTTTTTACTTTTG
ATTCATATTATCTTTTCTTGCTATTATCCTTTCTTACATTATTTTTAATT
TCTTTTCTTTCTTTATTTATTTTTATCTTCTCTATCTTTTCATATCTTTC
TATTTATTCTTTTTTCTACTATTCTTTATATATTCTTCCATTCTCATTTC
TCTAACTTTTATTTTTTACTTTTTACACATATTTTCTTTCTACTTATTTT
TCACTCATTATCTTTATAATTCTATTTTATCTCTTC
NNNAAAATGAAGTGAGACTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGCCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAACCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAATT
TTTTTTGCTCCACTATCTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TTTTTTTTCCCCCCCCCCCCCTNAANAGAGGACTGCATAAAAAAAAGGGG
GGACTTCTACTCNATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTACCCCAAAACCTAGGATACCCCAGATATAAGATACAATTTCCTAT
ACACATGATACTTCCAGAAAAATGAATACTGAAGTGTGTACCCTATACCC
CTCCTTAGAAATGGAAACAAAATCCTCTTGTTAAGGAGTTACGATACAAT
GTTTGTTACTGAATTGAAAGGATGTACCTTGTATATACTGCCTTATCTCT
GGATCCTCCCATTATCTAGCATCCACACGTTTAACACTATGGTTAATTTT
ATTTATATTTTAATCTAAAGTATCCATATGTTTTTCGTTTCTTGGTATAC
TTTGCTCATGTTTCTTTTTACACCTTATTTTTTTCTTCTTCTTCTCTTTA
TTGTATTTTTTTTTTTTATTTATTTTTCTGTTTTTATTATATATTACTTT
TTCATATATTTTTCATTCTCTTTTCCTAATATTACTTTCAATTCTTCTTT
TATTTATTTTTCTCTTTAATTATCTTCTTTTTTGTTTTCTTTTTCCACAT
TTTTTTTATATTTATCTTTTTCTTTTTGTCTTTTTATTATTCTTTTCTGT
ATTTCTTTTTTGTTTTCTTCTTTATCTTTTCATTCTTCTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_i14.b1 MSMg01no168_i14.b1 CHROMAT_FILE:
MSMg01no168_i14.b1 PHD_FILE: MSMg01no168_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:50 2005
         (366 letters)



>mm_chr5_78931241_78932006
          Length = 766

 Score =  636 bits (329), Expect = 0.0
 Identities = 344/349 (98%)
 Strand = Plus / Minus

                                                                       
Query: 18  gaattcacttcatatgacacgtgagaatatacttcaatacattattattacaaatagatt 77
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaattcacttcatatgacatgtgagaatatacttcaatacattattattacaaatagatt 507

                                                                       
Query: 78  cctattattaaaactatttatcacctaatgcctccaagtagggattacacaaatatactg 137
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 506 cctattattaaaactatttattatctaatgcctccaagtagggattacacaaatatactg 447

                                                                       
Query: 138 atataaatccacagagatatttcctaaggaatgtggaaatgaggggacaattgaatccct 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atataaatccacagagatatttcctaaggaatgtggaaatgaggggacaattgaatccct 387

                                                                       
Query: 198 catctaaaattacatggcctgaaattttcaagaatagcattttctggagcaatgacatat 257
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 386 catctaaaattacatggcctgaaatttttaagaatagcattttctggagcaatgacatat 327

                                                                       
Query: 258 tccttgaattccagaaggagtaccaaaaggcatattaaatatgtaaacacttcatttgta 317
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccttgaatttcagaaggagtaccaaaaggcatattaaatatgtaaacacttcatttgta 267

                                                            
Query: 318 tacattgtttatgtgaatgaaaatagacacatagtttgaaatgtgtata 366
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacattgtttatgtgaatgaaaatagacacatagtttgaaatgtgtata 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)