BAC Information

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BAC

Clone NameMSMg01-168I22
Chromosome5 (Build37)
Map Location 82,755,446 - 82,755,571
singlet/doubletsinglet
Overlap geneEG433912
Upstream geneLphn3
Downstream geneLOC100039434, Srd5a2l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168I22.T7 (MSMg01no168_i22.b1)MSMg01-168I22.TJ (MSMg01no168_i22.g1)
ACCAG365702AG365703
length1,3341,195
length of high quality
(start - end)
142 (30 - 171)319 (69 - 387)
definitionCHROMAT_FILE: MSMg01no168_i22.b1 PHD_FILE: MSMg01no168_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:53 2005CHROMAT_FILE: MSMg01no168_i22.g1 PHD_FILE: MSMg01no168_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATATATGGCCTAACNATCCTATAGGGAGAGGATCCGCGGAATTCTGTT
ATCACTTTTTGACTAAACTGAAGCTTTGGCTGTATTTATAGCCTATTTTA
AGTGTTTATAGAACTTTACCCCTAAATCAATTATCAATGTGTTGTATGTT
ATGTGTATGTGTTTAATTTATCACACTCTACTTATTCAAAAAATCTTTAC
TTATTGATAAAAATATAAACATTTTGTCTCTCATATGTTTACTATTCTAA
TGATTAATAATCTTCTATGCTATTACTATTTTATTTATAATAACTTAACT
TTTGCAAATTTCATTTTTTTTTACTTCTTGTTTTAATCATAATATACTCT
TTTTATACTTCATCCTCACTTTTTTTATCTAAATTTTTTTTTTTTACTCA
AACAACACCTCCTATTTTTTGATAAAGAAAAAANAAATTTTTTTTTTTCC
TTCTGCCCCCCNAAGANNNTTTTTTTTAAAAAAAAAAAAGAGGGGTNGNN
NNNTNNTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTGT
TTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGTTTTT
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTTGTGTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTGTTTTTTTT
TTTGTTTTTTTTTTTTTTTTTTTTTTGTTTTGTTTTGTTGTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTG
TTTTTTTGTTGTTTTTTTTTGTTTTTTTTTTTTTTTTTNTTTTTTTTGTT
TTTTTTTTTTTNTTTTGTTTTTTTTTTTTTTTTTTGTTTTGTTTTTTTTT
TTTGTTTTTTTTTGTTTTGTTTTTTTTTTTGTTTTTTTTTGTTTTTTTTT
TTGTTGTTTTTTTGTTTTTTTTTTTGTTTTTGTTTTTTTTTTTTTTGTTT
TTTTNTTTTTTGTTTTTGTTGTTTTTTTTNTTTGGTTTTGTGTTATTTTT
TTTTTGTGTATTTTTTTTAATATTTAATTATTATTTATTATTTTTTATAT
TAATTTTTTTTATATATTTGTATAATTATTTTATATTTATATAATTATTT
ATANATAATATTATAATAAATTTNATTTATTTATGATATTTGTTTATATA
ATTTATTATAATATTTATATTTATTTATATAATT
NNNTTATCTAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATGAATGGGT
GTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGG
TTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCG
TATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGAAT
GGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTA
AGGATTTTTGCATCGATATTCAGAAGAGAAATTGGTCTGAAGTTCTCTAT
CTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTATTTTTTTTTTCAT
AAAATGAGTTGGGTAGAGTACCTTCTAATTNAANCNCGTTTTTTTTTTTC
CCCCCCCCCCCGNAANAGANNNNNNAAAAAAAAAAAAAAGGGAGNNNNGN
NNNNNNNNNNGNNNGGNNNNGNNNNNNNNNNNGNNNNNGNNGNNNNNNNN
NNNNNGNNNNNNNNNNNNNNNGNGGNNNNGGGNNNGNNNNGNGGGGGNNN
NNGGGGNGGGGGGGGGGNGNGGGGNNNNGGGGNNNGNGGGNGGGGNGNGG
GGGGNGNGNGGGGGGGGNGGGGGGGGGGGGGGGGGNGGGGNGGGGGGNGG
GNNGNGGGGGGGGGGNGGGGGGGNGGGGGNGGGGGGGGNGGGGGGNGGGN
GGGGGGNGGGGGGGGGGGGGGNGNGGNNNGGGGGGGGGGGNGGGGGGNNN
GNNGGNGGGGGGNGNNGNGGGGGGGGGNNGGGGGGGGGGGGGGGNGGGGN
NGGGGGGGGGGGNGGGNGGGGGGGGGNNGNGNGGGGGNNGGGGGGNGGGG
GNGNNGGNNNGNNGGGGGGGGNGGGNGGGGGGGGGGGNNGGGGGNNGGGG
GNGGNGGNGGNGGGNNGGGGGGNNNGGGGGGGGGNNGGNGGGGGGNGGNN
NGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGNGNG
GGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGG
GGNGGGGGGGGGGGGGGGNGGGGGGGGNGGGGGGGGGNGGGGGGGGGGGG
NGNGGGGNGNNGGGGGGGGGGGGGGGGGGGNGGGNGNGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_i22.b1 MSMg01no168_i22.b1 CHROMAT_FILE:
MSMg01no168_i22.b1 PHD_FILE: MSMg01no168_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:53 2005
         (142 letters)



>mm_chr5_82755235_82755771
          Length = 537

 Score =  205 bits (106), Expect = 9e-58
 Identities = 123/132 (93%), Gaps = 7/132 (5%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattctgtta-tcactttttgactaaactgaagctttggctgtatttatagcctatttt 70
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 212 gaattctgttaatcactttttgactaaactgaagctttggctgtatttatagcatatttt 271

                                                                       
Query: 71  aagtgtttatagaactttacccctaaatcaattatcaatgtgttgtatgttatgtgtatg 130
           |||||||||||||||||||      |||||||||||||||| ||||||||||||||||||
Sbjct: 272 aagtgtttatagaacttta------aatcaattatcaatgtattgtatgttatgtgtatg 325

                       
Query: 131 tgtttaatttat 142
           ||||||||||||
Sbjct: 326 tgtttaatttat 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 537
Length adjustment: 8
Effective length of query: 134
Effective length of database: 529
Effective search space:    70886
Effective search space used:    70886
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)