BAC Information

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BAC

Clone NameMSMg01-169D12
Chromosome5 (Build37)
Map Location 7,069,984 - 7,070,276
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169D12.T7 (MSMg01no169_d12.b1)MSMg01-169D12.TJ (MSMg01no169_d12.g1)
ACCAG366155AG366156
length695722
length of high quality
(start - end)
320 (376 - 695)58 (185 - 242)
definitionCHROMAT_FILE: MSMg01no169_d12.b1 PHD_FILE: MSMg01no169_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:51 2005CHROMAT_FILE: MSMg01no169_d12.g1 PHD_FILE: MSMg01no169_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAATGTAGTTTTGATTTGTATTTTCTTGATGGTTTGGGTTGTTGAAT
GCTTCTTAAAGTGTTTATTAATATTTGTATTAGTGTTTCATCTTTTGAGA
GTTTCTGTTGAATTCTTTAGTCTTTAAAAGTGTGGTAATTTTTTTCTTGA
TATCTAGGTTTTGGAGGCATTTGCACATTCTAGGCATTAGCCCTCTGTCA
GATGTAGTCCCATTCTGTTGGCAGCCTCTTTATTCCATTTTCTTTTTCTT
CTGCAATACAATGGTTTCTATTTTATAATGTTCCATTTGTTGATATTCTG
TTTTGTTTTCCTCCACCCCCCCCGCACTTTGAAGAAAGTCCTGACTTACT
CTTTATCTGTAGGACAGAAAAATCATCTGTTGGGAAAATTGTCAGGATTG
GCTTTGTTTCTAAATGTTGCTTCAATTTTCTCCAATTATTCACAATCCTT
CTTTAAGTCTCTGAGTTTTCCATGCCAAGACTCATTGGCTTTCATCTCAA
GTCTCAAAATCTGGCTTTTTAGAATTCAGTTTCAATGCCATTTGACATTA
ACCTGATCCTAATTCAAATAGAAGTAACCTGTTTTTTTAAGCATGTGAAA
AATTCTTATCTGCCTCAGATGTCATTAGTCCTTGCACACACATTG
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAACTGCAACACAACTGAATAT
TCTTACTTTCTAGGCTCAGGCAGGAAAAAATTATTTTTTTCTCTTACGGT
TTTTCTTGGAAATCAAGAAAATATTACTATGGAAAAAAATATGAAAGTTA
TTTCAAATCCAGAACCTTTTACTCTGAGGTAAACAAATTCAATTGTGGTT
TAAGGCACAGGAGAGAGGAAGGCTCAAAGGAATAGGAAAATAGGAGGTAG
AAAATGTAGCCATTAAAATAAATACTTTTTTTAAAAGAGGGAATCCAAAC
AAAGNNAAATTTGTTTATGANTTCCAACAAGCCCCGAGTTGTTTATTTTG
TTGGGNAATTCGGTTTCNTTCCGGATAATTATGAAGAAAATTTAGGCGAG
GGGGTCCAGGGACCAATAATCAACCGCCAGGGAAAGCTCACTGACTTCCA
TTTTGCCACTGACCAAAGCTGTCCATTATGGTATAGCACAATATTCATCT
TACGGAATCAAAGAAGCAAAATCCTTTTCCATATAACAATAAAATCTAAC
TTTTTAGGTACGATATATCCCTATCCCGATTAAAAACCAAGTTTTAACCT
AAAAGAGCAGCAAGAGGCCTTACAAATAATCCCCCTTTACTTTCTCAAGG
GAATGGCAACCATTATTGGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_d12.b1 MSMg01no169_d12.b1 CHROMAT_FILE:
MSMg01no169_d12.b1 PHD_FILE: MSMg01no169_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:51 2005
         (320 letters)



>mm_chr5_7069822_7070538
          Length = 717

 Score =  453 bits (234), Expect = e-132
 Identities = 286/320 (89%), Gaps = 27/320 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgaagaaagtcctgacttactctttatctgtaggacagaaaaatcatctgttggga 60
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 455 actttgaagaaagtcctgacttactctttatctgtaggacagaagactcatctgttggga 396

                                                                       
Query: 61  aaattgtcaggattggctttgtttctaaatgttgcttcaattttctccaattattcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaattgtcaggattggctttgtttctaaatgttgcttcaattttctccaattattcacaa 336

                                                                       
Query: 121 tccttctttaagtctctgagttttccatgccaagactcattggctttcatctcaagtctc 180
           ||    |||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 335 tc---atttaagtctcggggttttccatgccaagactcattgtctttcatctcaagtctc 279

                                                                       
Query: 181 aaaatctggctttttagaattcagtttcaatgccatttgacattaacctgatcctaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaaatctggctttttagaattcagtttcaatgccatttgacattaacctgatcctaattc 219

                                                                       
Query: 241 aaatagaagtaacctgtttttttaagcatgtgaaaaattcttatctgcctcagatgtcat 300
           ||||||||||||||||                        ||||||||||||||||||||
Sbjct: 218 aaatagaagtaacctg------------------------ttatctgcctcagatgtcat 183

                               
Query: 301 tagtccttgcacacacattg 320
           | ||||||||||||||||||
Sbjct: 182 ttgtccttgcacacacattg 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 717
Length adjustment: 9
Effective length of query: 311
Effective length of database: 708
Effective search space:   220188
Effective search space used:   220188
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)