BAC Information

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BAC

Clone NameMSMg01-170P11
Chromosome5 (Build37)
Map Location 52,425,987 - 52,541,901
singlet/doubletdoublet
Overlap geneDhx15
Upstream geneLOC666265, LOC100041059, Ppargc1a
Downstream geneSod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170P11.T7 (MSMg01no170_p11.b1)MSMg01-170P11.TJ (MSMg01no170_p11.g1)
ACCAG367361AG367362
length737732
length of high quality
(start - end)
311 (48 - 358)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no170_p11.b1 PHD_FILE: MSMg01no170_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:04 2005CHROMAT_FILE: MSMg01no170_p11.g1 PHD_FILE: MSMg01no170_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:04 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(52,541,595 - 52,541,901)(52,425,987 - 52,426,274)
sequence
TATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGCTTAGAACTGAAGTTATTCAGAGGACAGCTTTAAAAGAT
GAATGAAGTCAAGTTCAAGTTGTGCTCTTCATGTTGGTTCAATAATGGCC
TTTATTTGAAAGCTTTTTAATTTTTCTTTACAGTAAATATTCCATTTTGA
TTTCATAAATTAAACATTTATGCCTCCCTTTTGTGTTGACACTGTAGCTC
ATACTGGAAAAGTCGATCAATGTTTTGCAGTTTATTGAAAGTAGTTCTAT
ATATAACAATGTTATAAGCATTTCTTTAGAAATGGTTGAAAATGCTTCTA
AAATGTGATTATTTTACCACTCCCCCCCCCCGATCGTTGTAATTGTTGAC
ATTCCTTTTAGAAGTTGTGAAATGATACAACTTGTGCTTCTGTAGACACA
ATCTTCTGTCTCCATACAGAGGCACTGACTTCAATAAAGTCTATTTATAC
TAATCTTGGCCCAAGTCCTTCTGTATCTTTTATTCTAAGAGTCTCTATAG
TGAGTGGCTGCTTTTCTTTTTTCATTGTAATTATACTGTTACTACGTATT
TAGCGTTTTTTAAAAGGAGTACTCCTTAGGTACAGTAGCCATTAAACCTG
GGTTTTAAAGAGCATAAATGTAGCACTTTCTTAGGTTAATCAGTATGTAA
TCTAATGGGATAACGTGTGTAATTTTTTTTGAAATTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTACTGCTATAAATAATTTGGA
AGCAGGATTGAATTAGTTTTTCCTCAATCAGGTGCCAAGCAGTGAAGATT
AAATTAACTGAATAATTCTTACAACATTAAGTAGACTTGAAGCTGGTTGG
GTAAAAATCCATTTGTGTAGCATCAATAGTTGAGGAAATTTGGACCAAAT
TTTTAAAAGTTTCATTTTAGACACAGAAGTATTTGATTTAATGTTAGGAA
CTTTGGCAGAGGCAAAAGCCCAGTGCAAAAACACGTTCACTGCCTAAAAG
AACAAAACCTTAGATACCATCCCCAAACAGNCCCGGAAAAAGACAACATA
AATTATGGACTTCAGCTTAATGGAATAATGCACACTCATTAAATGCATGA
AACAAAGCTGAGTAAGATTGTTTGTTCACTTCGACCGCAATCATATAATT
ATAAATTATGTATGCAAACCAAAAAATTTCCTAAAGATAAAATAATATGC
AAACTCAAAGCAATAAAAAAAGAGCTATGTTGTAGGAATAAGAATTATTT
TTCTTGCTTTTTTTCAAATTTCCCCTCAACGTTCTCACGAGACCATCCAG
AATTTATAAGGAAGAGAGAAGAGAAGGAGGAGGAGAAGGGAAATTCGGAA
GATAGGAAGTTGAGGGTAAATGTTAGGATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_p11.b1 MSMg01no170_p11.b1 CHROMAT_FILE:
MSMg01no170_p11.b1 PHD_FILE: MSMg01no170_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:04 2005
         (311 letters)



>mm_chr5_52541391_52542101
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgcttagaactgaagttattcagaggacagctttaaaagatgaatgaagtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcaatgcttagaactgaagttattcagaggacagctttaaaagatgaatgaagtca 452

                                                                       
Query: 65  agttcaagttgtgctcttcatgttggttcaataatggcctttatttgaaagctttttaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agttcaagttgtgctcttcatgttggttcaataatggcctttatttgaaagctttttaat 392

                                                                       
Query: 125 ttttctttacagtaaatattccattttgatttcataaattaaacatttatgcctcccttt 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 391 ttttctttacagtaaatattccattctgatttcataaattaaacatttatgcctcccttt 332

                                                                       
Query: 185 tgtgttgacactgtagctcatactggaaaagtcgatcaatgttttgcagtttattgaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgtgttgacactgtagctcatactggaaaagtcgatcaatgttttgcagtttattgaaag 272

                                                                       
Query: 245 tagttctatatataacaatgttataagcatttctttagaaatggttgaaaatgcttctaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tagttctatatataacaatgttataagcatttctttagaaatggttgaaaatgcttctaa 212

                  
Query: 305 aatgtga 311
           |||||||
Sbjct: 211 aatgtga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_p11.g1 MSMg01no170_p11.g1 CHROMAT_FILE:
MSMg01no170_p11.g1 PHD_FILE: MSMg01no170_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:04 2005
         (288 letters)



>mm_chr5_52425787_52426474
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttactgctataaataatttggaagcaggattgaattagtttttcctcaatcaggtgcc 60
           ||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 201 agttattgctataaataatttgtaagcaggattgaattagtttttcctaaatcaggtgcc 260

                                                                       
Query: 61  aagcagtgaagattaaattaactgaataattcttacaacattaagtagacttgaagctgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aagcagtgaagattaaattaactgaataattcttacaacattaagtagacatgaagctgg 320

                                                                       
Query: 121 ttgggtaaaaatccatttgtgtagcatcaatagttgaggaaatttggaccaaatttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggtaaaaatccatttgtgtagcatcaatagttgaggaaatttggaccaaatttttaa 380

                                                                       
Query: 181 aagtttcattttagacacagaagtatttgatttaatgttaggaactttggcagaggcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtttcattttagacacagaagtatttgatttaatgttaggaactttggcagaggcaaa 440

                                                           
Query: 241 agcccagtgcaaaaacacgttcactgcctaaaagaacaaaaccttaga 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccagtgcaaaaacacgttcactgcctaaaagaacaaaaccttaga 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)