BAC Information

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BAC

Clone NameMSMg01-171B23
Chromosome5 (Build37)
Map Location 106,116,196 - 106,286,701
singlet/doubletdoublet
Overlap geneLrrc8d, LOC100042335, D830014E11Rik, LOC100042349
Upstream geneLOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
Downstream geneZfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171B23.T7 (MSMg01no171_b23.b1)MSMg01-171B23.TJ (MSMg01no171_b23.g1)
ACCAG367466AG367467
length722752
length of high quality
(start - end)		668 (45 - 712)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no171_b23.b1 PHD_FILE: MSMg01no171_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:16 2005CHROMAT_FILE: MSMg01no171_b23.g1 PHD_FILE: MSMg01no171_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,286,038 - 106,286,701)(106,116,196 - 106,116,482)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCAGCTGCAACTGTACAGCTAAGTGAAGCCCTCTCACCCAGACAG
CCTCCGATTCTCAAGTCCAAAGAGGCTCACCATGCTCCACCTGGAGTGAG
TTTGGTAAAGAGACTTCGGCCAAGCCGGTCACTGTAGCTCCCTGAAATCT
CTCCAGGTCCACTGGTCAGGCAAGTGAGACCCAGGACAGGCTACTGAGCC
CAGGGGCCTCCTTATCTGGCCCTTTGAGGCTCAGTTTAATGAGGGTCAAA
ATGTCTGACTCAGAGAACATTTTCTATAATAAGGCAAACATGCAGTTTTG
GTTTGCAAAGACCTATATTATGCTCCACGGGCAAATGACAGAGCGGCTTT
TCTCTGTAAAAGAACACAGACATTACACAGTGAGCAAATCTGTTTCATAA
ACACCTCTGTGAGACTAACGCTTTACAGGAGGAGGAAGCCAGACAGAGGA
CCTTTCTCTTCCCAGAAAGGTTTTCTTCAGGAGGCTGTACCTTCCACTCT
GCTGTGCCTAACAAAAAGACAGGCTCAACTCTCCTCCTCCTCTCTGTCTT
TTTCCATTTCCCCTTCAGCCATAGGGTTTTAAGCTCATCTGTGTCATTTT
TATTGTGCTCAGACTTTGGGGGAAAAGCCATCTTGAATACTTTCTACCTG
GTTTAACAAGAAGCATCAACAG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATGATTCTGGATCTTATCATTGGTACATT
GTGCGAGGATGTAGCTTGGTCAATAGAGTGCTTGCTTAGCATACAGGAAG
TCCATGTTTGATCTCCACATTGTGTGTTGTGTCTGCAAAAAGGCCTTGGG
AAGCCCTGAAGGATAATGGGACAAAGCCAGGCTGTAGATTTCACAAAGCG
TCTGCTGGGCCACCTTAGCCCCTTGCTAATGATGCTACCGAGAGTCTGCG
AGTTTCCAGGTGGACTGATACCAAGGCCACCCTGGAGACCGTATGGATGG
TGCTCCCGTTCTTTTCCTCTCCTGACCACATTGCTCATGTTATTGAGCTC
TCCCCAATGTCAAGCACCAGTCATTTCCATTTTACTGCTGAAGAACCTAC
TCATAATGCTAAATGTCTGTGCCCCGCCCCCAGTTCATACATGAAGCCCT
AATCCCCAGCGTGGTGTAGCAGCTTTGGAGAAGGAATCAGAATAACTGAG
GCTAAATAAGGCGGTTAGGGTAGGACTAGTGCCCTAAGATGAGGCATCGC
AGAGTGCCTCATGGTCAAAGCCCATGTGCTGACACTGTTATAAGTAATCA
ACAGCAACCAAAGGGTATAGATGTCACCAGACAGTTGACCCTTCTATTAT
GCTGATCTTTGACCTTTACCTCCCAAATTTCATCACATTCCATGTCTGTT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_b23.b1 MSMg01no171_b23.b1 CHROMAT_FILE:
MSMg01no171_b23.b1 PHD_FILE: MSMg01no171_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:16 2005
         (668 letters)



>mm_chr5_106285834_106286901
          Length = 1068

 Score = 1207 bits (624), Expect = 0.0
 Identities = 654/664 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccagctgcaactgtacagctaagtgaagccctctcacccagacagcctccgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaattctccagctgcaactgtacagctaagtgaagccctctcacccagacagcctccgat 809

                                                                       
Query: 65  tctcaagtccaaagaggctcaccatgctccacctggagtgagtttggtaaagagacttcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 808 tctcaagtccaaagaggctcaccatgctccacctggagtgagtttggcaaagagacttcg 749

                                                                       
Query: 125 gccaagccggtcactgtagctccctgaaatctctccaggtccactggtcaggcaagtgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gccaagccggtcactgtagctccctgaaatctctccaggtccactggtcaggcaagtgag 689

                                                                       
Query: 185 acccaggacaggctactgagcccaggggcctccttatctggccctttgaggctcagttta 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 688 acccaggacaggctactgagcccgggggcctccttatctggccctttgaggctcagttta 629

                                                                       
Query: 245 atgagggtcaaaatgtctgactcagagaacattttctataataaggcaaacatgcagttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atgagggtcaaaatgtctgactcagagaacattttctataataaggcaaacatgcagttt 569

                                                                       
Query: 305 tggtttgcaaagacctatattatgctccacgggcaaatgacagagcggcttttctctgta 364
           ||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||
Sbjct: 568 tggtttgcaaagacctagagcatgctccaagggcaaatgacagagcggcttttctctgta 509

                                                                       
Query: 365 aaagaacacagacattacacagtgagcaaatctgtttcataaacacctctgtgagactaa 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaataacacagacattacacagtgagcaaatctgtttcataaacacctctgtgagactaa 449

                                                                       
Query: 425 cgctttacaggaggaggaagccagacagaggacctttctcttcccagaaaggttttcttc 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agctttacaggaggaggaagccagacagaggacctttctcttcccagaaaggttttcttc 389

                                                                       
Query: 485 aggaggctgtaccttccactctgctgtgcctaacaaaaagacaggctcaactctcctcct 544
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 388 aggaggctgtaccttccactctgctgtgccttacaaaaagacaggctcaactctcctcct 329

                                                                       
Query: 545 cctctctgtctttttccatttccccttcagccatagggttttaagctcatctgtgtcatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cctctctgtctttttccatttccccttcagccatagggttttaagctcatctgtgtcatt 269

                                                                       
Query: 605 tttattgtgctcagactttgggggaaaagccatcttgaatactttctacctggtttaaca 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 268 tttattgtgctcagactttgggggaaaagccatcttgaatactttctacctgttttaaca 209

               
Query: 665 agaa 668
           ||||
Sbjct: 208 agaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no171_b23.g1 MSMg01no171_b23.g1 CHROMAT_FILE:
MSMg01no171_b23.g1 PHD_FILE: MSMg01no171_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:16 2005
         (289 letters)



>mm_chr5_106115996_106116684
          Length = 689

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgattctggatcttatcattggtacattgtgcgaggatgtagcttggtcaatagagt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgactctggatcttatcattggtacattgtgcgaggatgtagcttggtcaatagagt 260

                                                                       
Query: 61  gcttgcttagcatacaggaagtccatgtttgatctccacattgtgtgttgtgtctgcaaa 120
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gcttgcttagcatacgggaagtccatgtttgatctccacattgtgtgttgtgtctgtaaa 320

                                                                       
Query: 121 aaggccttgggaagccctgaaggataatgggacaaagccaggctgtagatttcacaaagc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggccttgggaagccctgaaggatgatgggacaaagccaggctgtagatttcacaaagc 380

                                                                       
Query: 181 gtctgctgggccaccttagccccttgctaatgatgctaccgagagtctgcgagtttccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gtctgctgggccaccttagccccttgctaatgatgctaccgagagtcagcgagtttccag 440

                                                          
Query: 241 gtggactgataccaaggccaccctggagaccgtatggatggtgctcc 287
           |||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 441 gtggactgataccaaggccaccctggagaccgtgcggatggtgctcc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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