BAC Information

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BAC

Clone NameMSMg01-171C13
Chromosome5 (Build37)
Map Location 7,305,700 - 7,306,005
singlet/doubletsinglet
Overlap gene4921511H03Rik
Upstream geneLOC100041208, EG435830, LOC100042651
Downstream geneLOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840, Adam22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171C13.T7 (MSMg01no171_c13.b1)MSMg01-171C13.TJ (MSMg01no171_c13.g1)
ACCAG367490AG367491
length715738
length of high quality
(start - end)
317 (46 - 362)305 (434 - 738)
definitionCHROMAT_FILE: MSMg01no171_c13.b1 PHD_FILE: MSMg01no171_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:19 2005CHROMAT_FILE: MSMg01no171_c13.g1 PHD_FILE: MSMg01no171_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTCATATCTTTACTCCACTTATAATTGGGTTACTTGTTTCT
AGATATATAATTTCTTGACTCCCTTATGTATTTGAGTATTAGTCATCTAT
AAAATGTGTAGTTGACATAAATATTTTCCTGCTATTTAGGGTGTCACTTT
GTACAAGTGACTGTATACTTTGCTGTGCAGAAGCCTCCCAGGTTTATGAA
GTTCCATTTATGATTGACATTAGTGCCTCTGCTAGCAGTGTTCTCCTCAG
AAGGTCTTTTTCTGTACCAATGATTTCAAGGTTATGAGGAAAATATTTTT
AAAATATTAGGTTATCTAATCCCTCCACCCACACAATAATTTGGAGCTTA
TTTATACTTTGATTTGTTTGACAAATGTTGATCATTTTTCTGTATAGATC
ATATAAGTATCTGTGCCAAGTTGCTTCAGTTTTTGATGTTATAATATTTT
TTTCATTTTCAATTTTAATTGTGTGCTGTTGGTGTCTTAAAGTTGAGTAA
TTAATTGACCTTGTCATCTATGATTTTAATAATACTGTGTTATTAGTTTC
AGGTAAGTTTTGTCAGGGTTTTAATTGCATAAACAGTGTGACGTCTATGC
TTATCTGTCAATTTCCATCATGGCGCGTAATAACAATTAACATGTCTGTG
AACCCCCTTCCTATA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCACCATGACTCACAAACTGGCA
CTCCAACTTTACAAGACTGTGACCTTGGGCGCGAAAGGTCCAGGTGACAA
CTTACACCAACTTGCCCCTGAACTCATTCTCCCAGAACAAATTATCAAGT
ATTTATGCAAAGCTGAAGAATTCATGGACCCAGCGTCTTTCTTGAGCATG
TATAACAGACCCATACACGTTACCCTGGATTCCGATATTGTGTGGCCAGC
TCCTTCCCGTTTCTAGAATGTGGAGAGTTGATTTGGGTCTGTCTCATCAA
GTTTTTGNACTANNTTACCCANACAGGCCCCATATAAACTTACTCTTAAA
TAAGAGAACAGAACATTAAAATAAGAACACATGTAGAATTTTAATATTAG
AGCTAAACATAGGAATACATCTGCTTGTTGTAGTATGAAGCTCAATTCAC
ATTTTAAAAGTAAACGGGTTTAATAAATTTGTAAGTTCCATCATTTTCAT
GGGATAATTTAAAGCATAGATGGAAGGGAATTAACACCATTTAAGCATTA
AGTTCTCATGCATTCTCAGGACAGTTAACAAGCAGTCTTTATCATATGGC
TGCACAAAGGTGTTTGAGGGTGGATCATTTCTAACGCTTAGACCCTTAAG
AAACTTGCAACCTAAAGTTACAATCAAGCATGCTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_c13.g1 MSMg01no171_c13.g1 CHROMAT_FILE:
MSMg01no171_c13.g1 PHD_FILE: MSMg01no171_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:19 2005
         (305 letters)



>mm_chr5_7305500_7306205
          Length = 706

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%), Gaps = 1/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaatttt-aatattagagctaaacataggaatacatctgcttgttgtagtatgaagct 59
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaatttttaatattagagctaaacataggaatacatctgcttgttgtagtatgaagct 260

                                                                       
Query: 60  caattcacattttaaaagtaaacgggtttaataaatttgtaagttccatcattttcatgg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattcacattttaaaagtaaacgggtttaataaatttgtaagttccatcattttcatgg 320

                                                                       
Query: 120 gataatttaaagcatagatggaagggaattaacaccatttaagcattaagttctcatgca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataatttaaagcatagatggaagggaattaacaccatttaagcattaagttctcatgca 380

                                                                       
Query: 180 ttctcaggacagttaacaagcagtctttatcatatggctgcacaaaggtgtttgagggtg 239
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttctcaggacagttaacaagcagtctttatcatatggctgcagaaaggtgtttgagggtg 440

                                                                       
Query: 240 gatcatttctaacgcttagacccttaagaaacttgcaacctaaagttacaatcaagcatg 299
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcatttctaacacttagacccttaagaaacttgcaacctaaagttacaatcaagcatg 500

                 
Query: 300 ctatat 305
           ||||||
Sbjct: 501 ctatat 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 706
Length adjustment: 9
Effective length of query: 296
Effective length of database: 697
Effective search space:   206312
Effective search space used:   206312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)