Query= MSMg01no171_d05.b1 MSMg01no171_d05.b1 CHROMAT_FILE:
MSMg01no171_d05.b1 PHD_FILE: MSMg01no171_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:22 2005
(331 letters)
>mm_chr5_71997870_71998602
Length = 733
Score = 569 bits (294), Expect = e-166
Identities = 311/317 (98%), Gaps = 2/317 (0%)
Strand = Plus / Plus
Query: 16 ggaattcatttttaatgaacataatancaa-caggaattcctatataaaagtctaattct 74
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct: 216 ggaattcatttttaatgaacataaaaacaaacaggaattcctatataaaagtctaattct 275
Query: 75 atttcttatgaattgctggaggatactaaaatagctttctgtcagc-gctcaggtcccca 133
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 276 atttcttatgaattgctggaggatactaaaatagctttctgtcagccgctcaggtcccca 335
Query: 134 ttgactataatctattttagtccccaaatgtattcttgttctgtggataataggtaacct 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttgactataatctattttagtccccaaatgtattcttgttctgtggataataggtaacct 395
Query: 194 ccttggtgccatttttagaacagccccattagcaaacattaggcagacagcgtgtgaaca 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccttggtgccatttttagaacagccccattagcaaacattaggcagacagcgtgtgaaca 455
Query: 254 tttttcaggatctgctggagcaaagtgggattcttgcatatgcagcaatagtgagcctag 313
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 456 tttttcaggatctgctggagcaaagtgggattcttgcagaggcagcaatagtgagcctag 515
Query: 314 cacactggaaagtgccc 330
|||||||||||||||||
Sbjct: 516 cacactggaaagtgccc 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 733
Length adjustment: 9
Effective length of query: 322
Effective length of database: 724
Effective search space: 233128
Effective search space used: 233128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_d05.g1 MSMg01no171_d05.g1 CHROMAT_FILE:
MSMg01no171_d05.g1 PHD_FILE: MSMg01no171_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:22 2005
(291 letters)
>mm_chr5_72141259_72141951
Length = 693
Score = 547 bits (283), Expect = e-160
Identities = 290/293 (98%), Gaps = 2/293 (0%)
Strand = Plus / Minus
Query: 1 taaactttgtgtttgtgctaattcgatatttcctttcattccctgcatcaaatgctaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taaactttgtgtttgtgctaattcgatatttcctttcattccctgcatcaaatgctaata 434
Query: 61 caaacaatacttctattgtcataggcaacctgtgaattgattttaaagattaaaggctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 caaacaatacttctattgtcataggcaacctgtgaattgattttaaagattaaaggctgt 374
Query: 121 ctggatacaaagtggttttagttgactttcaaatcccattttcacttcttttgaaagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctggatacaaagtggttttagttgactttcaaatcccattttcacttcttttgaaagcaa 314
Query: 181 caaaaatgtgtagattaaaatatgaacaaaagtcatagaatctaaaggagattaacatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caaaaatgtgtagattaaaatatgaacaaaagtcatagaatctaaaggagattaacatat 254
Query: 241 gcacttca--ttttttttcattaaatgttcagtgtttcaaatatatgtactgc 291
|||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 253 gcacttcattttttttttcattaaatggtcagtgtttcaaatatatgtactgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 693
Length adjustment: 9
Effective length of query: 282
Effective length of database: 684
Effective search space: 192888
Effective search space used: 192888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|