BAC Information

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BAC

Clone NameMSMg01-171P09
Chromosome5 (Build37)
Map Location 83,440,066 - 83,440,356
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608, LOC231368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171P09.T7 (MSMg01no171_p09.b1)MSMg01-171P09.TJ (MSMg01no171_p09.g1)
ACCAG368024AG368025
length778743
length of high quality
(start - end)
316 (47 - 362)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no171_p09.b1 PHD_FILE: MSMg01no171_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:18 2005CHROMAT_FILE: MSMg01no171_p09.g1 PHD_FILE: MSMg01no171_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGCCCATGGTCAGATCAAGGACTTTCTAGGACATTGGAACAC
TGGCGAAGTCTTAGCTATGTCAGTATTCAATCCTAAAAGGCACTTATAAT
AAGATAATACTAAAAGAGAGTATGTGGATCCATACACCAGACTAACATGG
GAATAGGGTATGAGTATATGGGTTAATGAGAATGCCAAAACTCCAGGAGG
TGAGTTTCAGTGAAACTCTCTGCCTCGTGAGTGGCTTTAAGGCTTCAGGC
CTGTCAAGCTGATTGGACCTGATTGTTTGGCAGTGCTATTCTAGAGAACA
GAAAAATTACATATTGTGGGCTTCCNAATCGGGCCACATTAGAACTATTT
GCATATTTCTTAAGTGACCCCCCTATAGAAAAAAATAAAAGTTTTGGCGG
GGGTGCTTTCTTTTTTTCTTAACCCCCACCCCCTTTCGACATGATCTTTT
CCCCTTCATTTTTTTTGATTTCTTCCCCCTTTTTTATTCCCCCCCCCCCC
TCCCCTTTTTCATTTTTCCCAATAATATACCCCCTTCACAAACCCCCAAT
ACCCTTTTTCATTTTTTCTTATTTTTTATCACCCCCTTTTCCCACCTTTT
TAAAAAATTTTTTTTAATTTCCCCCTTTTTTCCCCACCCCTTCTTTTTCT
CCATATTTTCTTCCCCGTTTATATTTTCCACTTTTTTCTCCAACCCTTTT
TTCCTCACCTTCTCTTTTTTCCCCCTTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACTGAGAAACCCT
GTCTCAAAAAATCAAAAAAAAAAAAAAAAAAGAATTTAATGTTTTAAATT
TTTTCCAACTCAAAATTATAAAGTGGGAATGGCAAAACCAAAGCATAAGA
TTACAGGTAGTTTCCATTCTTTTATAAATAATAGCAATTCTGAAATAAAC
CTAAGTATTGTTCATGTTGCCTATATTATATTTAAAAAAATAGAAACTTT
ATTATTTTAAAGCTTCACGTGCATATTAATATAATGGATTTTTAGTGTTT
TCCCTATATCCTGAACACACGACTCTTCAAGATATTGTTATTATTATTAT
TGTTGTTGTTGCTGCCCGATAAAAAAAAAAAGAATATTGTATGGGGGGGT
TTATTACCCCATCTATCTTTTCCGTTATCCAGAACCAATTTATAACATTT
CTAAACTTTTCTATTACTCCCTTGACCTCCCCTTCCTTTTTTCACTTCCA
TTCCTTTGACTTGCCTAGTTATCCACAACTTTCCTTACTTTACTGCTCCC
TTTTATTCTTTTTTCTATTATCCTATTATCCAACCTATTTTTAACAACTC
GACATTTCTCTTTTTTTATTTTCATCCCGCATCTCCCCACAATTTTTCTA
TTAAATTTACTTTATTAATAAATCACTACATTATCATTCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_p09.g1 MSMg01no171_p09.g1 CHROMAT_FILE:
MSMg01no171_p09.g1 PHD_FILE: MSMg01no171_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:18 2005
         (289 letters)



>mm_chr5_83439868_83440556
          Length = 689

 Score =  455 bits (235), Expect = e-132
 Identities = 276/295 (93%), Gaps = 12/295 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacactgagaaaccctgtctcaaaaaatc------aaaaaaaaaa 54
           ||||||||||||||||||||||||||||| |||||| |||||||      ||||||||||
Sbjct: 199 caggacagccagggctacactgagaaaccttgtctcgaaaaatcaaaaaaaaaaaaaaaa 258

                                                                       
Query: 55  aaaaaaaagaatttaatgttttaaattttttccaactcaaaattataaagtgggaatggc 114
           ||||||||||    |||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 259 aaaaaaaaga----aatgttttaaaaattttccaactcaaaattataaagtgggaatggc 314

                                                                       
Query: 115 aaaaccaaagcataagattacaggtagtttccattcttttataaataatagcaattctga 174
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 aaaaccaaagcataagattacaggtagtttccattcttttataaatgatagcaattctga 374

                                                                       
Query: 175 aataaacctaagtattgttcatgttgcctatattatatttaaaaaaa-tagaaactttat 233
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 375 aataaacctaagtattgttcatgttgcctatattatatttaaaaaaaatagaaactttat 434

                                                                  
Query: 234 tattttaaagcttcacgtgcatatta-atataatggatttttagtgttttcccta 287
           ||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct: 435 tattttaaagcttcatgtgcatattacatataatggatttttagtgtttacccta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)