Query= MSMg01no172_f03.b1 MSMg01no172_f03.b1 CHROMAT_FILE:
MSMg01no172_f03.b1 PHD_FILE: MSMg01no172_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:45 2005
(315 letters)
>mm_chr5_68227382_68228096
Length = 715
Score = 588 bits (304), Expect = e-172
Identities = 310/312 (99%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 5 gaattcc-aacatcatacatacacttgcagaaactggccacagctggcaaaatcacactg 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaattccaaacatcatacatacacttgcagaaactggccacagctggcaaaatcacactg 649
Query: 64 cggccagatcacgaggcaaatcatagtcagctgctatggatgatctgaagcagccccgga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cggccagatcacgaggcaaatcatagtcagctgctatggatgatctgaagcagccccgga 589
Query: 124 tcccacacatgggattaaaacaaaaatatattcccatgacttttctatacttttaaagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tcccacacatgggattaaaacaaaaatatattcccatgacttttctatacttttaaagaa 529
Query: 184 gccaaagttctaacccagaaacacgaggtctgtatgtgctctctcatgtgtggatctcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gccaaagttctaacccagaaacacgaggtctgtatgtgctctctcatgtgtggatctcag 469
Query: 244 ctatactgaaatcatatgtatacatgcgagcaaattaagctttagagaggcgactggaga 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 468 ctatactgaaatcatatgtatacatacgagcaaattaagctttagagaggcgactggaga 409
Query: 304 gggtaatcattg 315
||||||||||||
Sbjct: 408 gggtaatcattg 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_f03.g1 MSMg01no172_f03.g1 CHROMAT_FILE:
MSMg01no172_f03.g1 PHD_FILE: MSMg01no172_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:46 2005
(286 letters)
>mm_chr5_68058906_68059591
Length = 686
Score = 495 bits (256), Expect = e-144
Identities = 278/286 (97%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 aaaacaagaagataacaaacatcctggaagcaaatgggtaggtgacatccaggagacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacaagaagataacaaacatcctggaagcaaatgggtaggtgacatccaggagacatg 260
Query: 61 tttaagtaccagcaggtgtcatcagaaattcattgcaaagaagacggcataggaagctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaagtaccagcaggtgtcatcagaaattcattgcaaagaagacggcataggaagctgt 320
Query: 121 tgagggggttatgagtgcagtggccagtggttaagagctgtattgcccttggagacctgg 180
|||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tgagggggcta--agagcagtggccagtggttaagagctgtattgcccttggatacctgg 378
Query: 181 attcagtgcttagcatctatgtcaggtggcttacaaccatctataactccagctccagga 240
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 tttcagtgcttagcacctatgtcaggtggcttacaaccgtctataactccagctccagga 438
Query: 241 gaccccacaccctcttctggcccctgtgggtatctgccactcacat 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaccccacaccctcttctggcccctgtgggtatctgccactcacat 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|