Query= MSMg01no172_l02.b1 MSMg01no172_l02.b1 CHROMAT_FILE:
MSMg01no172_l02.b1 PHD_FILE: MSMg01no172_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:13 2005
(498 letters)
>mm_chr5_18387383_18388279
Length = 897
Score = 903 bits (467), Expect = 0.0
Identities = 488/499 (97%), Gaps = 9/499 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctggtcatttaca----taattctgtgtagaagtacaaaaaaaaaaatctgtg 59
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattcctggtca----caaagataattctgtgtagaagtacaaaaaaaaaa-tctgtg 258
Query: 60 attaggagcaagtcttgccagacaagtgatgaaaattcattagtataatcactggtctct 119
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 259 attaggagcaagtcttgccagataagtgatgaaaattcattagtataatcactggtttct 318
Query: 120 cacattagtgttatggattgcttaatttgctgttttcattttctatgtgataaattctgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacattagtgttatggattgcttaatttgctgttttcattttctatgtgataaattctgt 378
Query: 180 cacctaagaatttgcatcataaaatgtgaattgcttttcactgtattgtatctttatttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacctaagaatttgcatcataaaatgtgaattgcttttcactgtattgtatctttatttt 438
Query: 240 tttcaatgtcaacaatgccttcatttgctatttaaaaatcattttcttgccccttttcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttcaatgtcaacaatgccttcatttgctatttaaaaatcattttcttgccccttttcag 498
Query: 300 cccctttgagtatatgggatattctttattttatttttagacattttagcattttccttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cccctttgagtatatgggatattctttattttatttttagacattttagcattttccttt 558
Query: 360 cccaaggcatttttctgcatggtttcagtggctcagtagggcccagtcacttctctacat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cccaaggcatttttctgcatggtttcagtggctcagtagggcccagtcacttctctacat 618
Query: 420 tagcctctttatacttttttcattacaattttatttccttttatgacagacaattactca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tagcctctttatacttttttcattacaattttatttccttttatgacagacaattactca 678
Query: 480 tgcggacatgtcagtttag 498
|||||||||||||||||||
Sbjct: 679 tgcggacatgtcagtttag 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 897
Length adjustment: 10
Effective length of query: 488
Effective length of database: 887
Effective search space: 432856
Effective search space used: 432856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_l02.g1 MSMg01no172_l02.g1 CHROMAT_FILE:
MSMg01no172_l02.g1 PHD_FILE: MSMg01no172_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:13 2005
(329 letters)
>mm_chr5_18530572_18531300
Length = 729
Score = 621 bits (321), Expect = 0.0
Identities = 327/329 (99%)
Strand = Plus / Minus
Query: 1 tttaatttattttatatatatttatagtttcttaatgtaaattttaataggtcttgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttaatttattttatatatatttatagtttcttaatgtaaattttaataggtcttgctgt 432
Query: 61 agcctgcactgtaaacttctcacactttaaaaaaaatgcttacttgcatgaaataaactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agcctgcactgtaaacttctcacactttaaaaaaaatgcttacttgcatgaaataaactt 372
Query: 121 gagttttatttttgctatatccattggtccagtttcagggggtctaatcttttctgtagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gagttttatttttgctatatccattggtccagtttcagggggtctaatcttttctgtagt 312
Query: 181 ttctttttctaatgaatgttgtcactattctaaatgagtgttagaattatgctttattat 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttctttttgtaatgaatgttgtcactattctaaatgagtgttagaattatgctttattat 252
Query: 241 tattattatttcttttacagtctagtcacctccctcccacagttcctcatcccatccttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tattattatttcttttacagtctagtcacctccctcccacagttcctcatcccatccttc 192
Query: 301 cactcccctgtctccaagaggatgtcccc 329
|||| ||||||||||||||||||||||||
Sbjct: 191 cacttccctgtctccaagaggatgtcccc 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
