BAC Information

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BAC

Clone NameMSMg01-173P15
Chromosome5 (Build37)
Map Location 126,880,297 - 126,880,606
singlet/doubletsinglet
Overlap genenone
Upstream geneDhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173P15.T7 (MSMg01no173_p15.b1)MSMg01-173P15.TJ (MSMg01no173_p15.g1)
ACCAG369421AG369422
length709870
length of high quality
(start - end)
314 (37 - 350)99 (130 - 228)
definitionCHROMAT_FILE: MSMg01no173_p15.b1 PHD_FILE: MSMg01no173_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:44 2005CHROMAT_FILE: MSMg01no173_p15.g1 PHD_FILE: MSMg01no173_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGC
TTTATTGGAGCTTATGTAGTAACAACAGTACCACAAAACCCATCTCCAAT
TATTGAGTCAGAATCTTTATGCAAGGTGTTTACAGCTCCATAGTACATGG
GGAATTATCTTTCTCAGCATGTGAACTTTCACAAGGTAGCAATAACACTG
TCAACTCAGAAAAGACAGGTGAGACTGTAGCAGCTGGCCAGTTAAGACTT
CAGAACATGACTAACCATCTACCCTATGCATAGCCACATGTTCATGAGAC
ACAGGGAGGAGGCAGTTGTTGTAAGAGTCTCTGGTCAATGGGCTGCCCTC
TTTCTTATCACGGAACTNGACCCGTGGGCAGTGAGCAGCATTAGGGACAC
AGAAGAGGCCAAATGAATAGAGAGACTGAGCCCTAAATGGGACTTATATC
AACTCCATCCTCATGTCAGGGCTCAGAAAATATCAGCAGAATAAAGGGGA
GAGGGAAGACTATAAGAGCTGGAGGAAGAAGAGGAGGAGGAGTTCCAGCC
TTTTTATCACCCTTCACATATACACATCTCTCCCCTTATTTTCCTTTCCT
TTCCTCTCCATTTTTTTTCCTCTCTGCCCTCTAATTATCTTCGCCAAAAA
TTCCAATCTTCACACTGTTTCCCCCCCATACTTCATATCCCATCTTCCTT
TTTCTTTTN
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCATAACGAGGACACAAAAACT
GTTCAAAACGAAGCAGGATGATGCCATAGGAAAAGAGAGTAGCAATGGAA
CAGCAAAGCAGGAGAAAAGGGAGAGAGGGAGGAAGATGAAGAGAGAAAAA
GAGAGGGGGAAAGGAAGGAAGAGGAAGAGGTTTTTTTTTTCTTTTTTCTT
TTTTTTCCTCCCCTCCACCTCACTTTCCCCCATTTCTTCCCCCTTCCTTT
ATCTCTCATTGTTCCCCCCCTCTTTTTTTTTTCTATTACCCGCGCGGTTA
CGACCCCCCCGCCGGTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCT
AGAGAAGCTTTTTTTTTTTTCCCCCCCCGTTCTTCCCCCCCCAAAAAAAA
AAAAAAATATTTCCTGTGGGGGGGGGCCGCCCCTTTCCTCCTTTTTTCCC
CTTTTATTTTCCCCTTTGCTCCCTTTCTTCCTTTCCCTCTCCCCCCCCCT
TTTCCCCCTTATTCTCCTTCACTCACCTTCCTTTCCCCCCCTTTTTCCCT
CCCTTTTTCCCCCTTCTCTCCTCTATTTCTCCCACCTTCCATTTTCTTCT
TCTGCTTTCTATTCCTTCTCTACACCTATTATTTCCTACCTCTGAATCCT
GTCGCGCCTCTATTTTTGTCTCTCCCTCACCCCCTTGCTCTTTCTCTTTT
CTCTTTGTTCTCCCCCTTCTCTTTCCCACTTATATTTTAATTTTTTCTTT
CTACCCCTTCTCTCCCACTTCCTCTTCCTTCTCCTCAACCACTGCTGACA
CGCCCCCTTTCCTCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_p15.b1 MSMg01no173_p15.b1 CHROMAT_FILE:
MSMg01no173_p15.b1 PHD_FILE: MSMg01no173_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:44 2005
         (314 letters)



>mm_chr5_126880093_126880806
          Length = 714

 Score =  524 bits (271), Expect = e-153
 Identities = 301/311 (96%), Gaps = 2/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgctttattggagcttatgtagtaacaacagtaccacaaaacccatctccaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgctttattggagcttatgtagtaacaacagtaccacaaaacccatctccaat 264

                                                                       
Query: 65  tattgagtcagaatctttatgcaaggtgtttacagctccatagtacatggggaattatct 124
           |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct: 265 tattgagtcagaatctttatgcaaggagtttacagctccatagtgcatggggaactatct 324

                                                                       
Query: 125 ttctcagcatgtgaactttcacaaggtagcaataacactgtcaactcagaaaagacaggt 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 ttctcagcatgtgaactttcacaaggcagcaataacactgtcaactcagaaaagacaggt 384

                                                                       
Query: 185 gagactgtagcagctggccagtta-agacttcagaacatgactaaccatctaccctatgc 243
           ||||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct: 385 gagactgtagcagttggccagt-acagacttcagaacatgactaaccatctactctatgc 443

                                                                       
Query: 244 atagccacatgttcatgagacacagggaggaggcagttgttgtaagagtctctggtcaat 303
           | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 acagccacatgttcatgagacacagggaggaggcagctgttgtaagagtctctggtcaat 503

                      
Query: 304 gggctgccctc 314
           |||||||||||
Sbjct: 504 gggctgccctc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)