TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTAGGTAGATTTTGGAGGATAGACTTTGATTCATGTACCGTGAA
CAGCAGATGATGTGTTTTGAGCAATGTAGTCTTAATTTTGCTGGAGGAAA
AGCCAGCTTTGGTTTTGAATTTTATGTGCAGACTTAACTCAGGCTGTACT
TCGGGTAATTGTACCTAATTAGTCCAAAGCGAGACCAGATATCAGTAATC
CTAGTTTGAAAGATAAGATTACGGGTGCTTCCACGTCCCTGGGGCTTTCT
TTCCTCTTTCTCCTCCTCCTTNTCCCTCACCTCTTTTTTCTNNNNNNCCT
TTTTTTTTTTTTCCAAAAACTTTTCCCCCTTTTTTTTTAGGGGTTNTGTT
TTTTTTCCCCAATTAAAAAAAAAAAAATAAAATTTTTTGGGGGGCGGGGC
CTCCATTTTTTCCGGGTTAAACGGGAAACCCCAATTTACACCCCGTTTAC
CTTTTCCTCTAAAAAAATGGTCCCCCCCCCTGTCCCCCCAATGGCGGGGT
TAACAGGCTTTTTATGTCCCCTCTGTGGTTGGCCACTTTTTTTTTCTCCA
AAAAAAAAAATTGGGCCTTTTTATTTATTTCCCCCCTCCCCAAAACACAT
TACTTTTTTTTTGTCGAAATACCCATGTTCCGCCCCCCCCCTTATCTCTT
ATTTTCGCCTAAAACAATTTTTATTACCCCTCACTCTCTTG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCCTGTCTGTCTCTCAGCTCACTTA
TGGGAGCAAGCTGTTTTTTTGTCTAGCTTTTCATGCTCTCTGAGGCTTTG
AACTAACACTCTCCAAGCAAACACTTTACCTACTGAGCCATATCTCTCAT
CTCTAAACTTGGACACCTTCTTCCAGAAAGAGAATAGATATACTCAGCAG
GCAGACAGACTTCTTCCTATAGACTTGAGAGTTAGATGTCCCTCCCCTGT
CTATCTATGCATGGGATGCCTAATGCCCCACTCCCTGATGCCCACAGGTT
GGTACTGCATATACCTTTTTACCCCCCCCCCCCCCCAAAACTGGGGAGGA
CATTCATGCCTAGGCAGATCTGGAGGTAAAAAAAACAAGGTTGCAATCTG
GGTTTGTCATCCTTCAGCAGCATTGGGAGAGATTGTTGGTGTATTGCAAA
ATTAGAGATGCTGTGTGGCGGGCTCCTGTCATCATATTTCATGGCCCCCT
TTCTCTGCTTTGGTGATCAATGATGTTGTGAGGAGACCCCATTTCTCAGC
TTGTTTTTGTTGTTGGTTTTGATTACCAGTTCAAAGATCAAAAACAGCCC
CAGCCTGGTCTGCTTTCTTGTAACCTGCTCCTTCTCCCATATTCCCCCAA
ATAAATAATATCATGAGATTCGCTTTTTCTTCTAAGTCN

Query= MSMg01no174_a13.b1 MSMg01no174_a13.b1 CHROMAT_FILE:
MSMg01no174_a13.b1 PHD_FILE: MSMg01no174_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:48 2005
         (271 letters)



>mm_chr5_128139019_128139689
          Length = 671

 Score =  487 bits (252), Expect = e-142
 Identities = 264/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttaggtagattttggaggatagactttgattcatgtaccgtgaacagcaga 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttaggtagattttggaggagagactttgattcatgtaccgtgaacagcaga 263

                                                                       
Query: 64  tgatgtgttttgagcaatgtagtcttaattttgctggaggaaaagccagctttggttttg 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 tgatgtgttttgagcaatgtagtcttaatcttgctggaggaaaagccagctttggttttg 323

                                                                       
Query: 124 aattttatgtgcagacttaactcaggctgtacttcgggtaattgtacctaattagtccaa 183
           || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 aactttatgtgcagacttaactcaggctgtactttgggtaattgtacctaattagtccaa 383

                                                                       
Query: 184 agcgagaccagatatcagtaatcctagtttgaaagataagattacgggtgcttccacgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcgagaccagatatcagtaatcctagtttgaaagataagattacgggtgcttccacgtc 443

                                       
Query: 244 cctggggctttctttcctctttctcctc 271
           ||||||||||||||||||||||||||||
Sbjct: 444 cctggggctttctttcctctttctcctc 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no174_a13.g1 MSMg01no174_a13.g1 CHROMAT_FILE:
MSMg01no174_a13.g1 PHD_FILE: MSMg01no174_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:49 2005
         (194 letters)



>mm_chr5_128298443_128299036
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttgcaatctgggtttgtcatccttcagcagcattgggagagattgttggtgtattgc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||
Sbjct: 394 aggttgcaatctgggtttgttatccttcagcagcattgggagagattgttggtgtagggc 335

                                                                       
Query: 61  aaaattagagatgctgtgtggcgggctcctgtcatcatatttcatggccccctttctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaaattagagatgctgtgtggcgggctcctgtcatcatatttcatggccccctttctctg 275

                                                                       
Query: 121 ctttggtgatcaatgatgttgtgaggagaccccatttctcagcttgtttttgttgttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctttggtgatcaatgatgttgtgaggagaccccatttctcagcttgtttttgttgttggt 215

                         
Query: 181 tttgattaccagtt 194
           ||||||||||||||
Sbjct: 214 tttgattaccagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)