BAC Information

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BAC

Clone NameMSMg01-174P20
Chromosome5 (Build37)
Map Location 68,096,088 - 68,223,849
singlet/doubletdoublet
Overlap geneAtp8a1
Upstream gene3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, LOC100042458
Downstream geneEG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174P20.T7 (MSMg01no174_p20.b1)MSMg01-174P20.TJ (MSMg01no174_p20.g1)
ACCAG370123AG370124
length746743
length of high quality
(start - end)
323 (41 - 363)292 (71 - 362)
definitionCHROMAT_FILE: MSMg01no174_p20.b1 PHD_FILE: MSMg01no174_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:58 2005CHROMAT_FILE: MSMg01no174_p20.g1 PHD_FILE: MSMg01no174_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,096,088 - 68,096,405)(68,223,558 - 68,223,849)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACACTGGTGTACAGGTGTGGCAAGCAAGGTGTTGGGTTTATTTTGGCAGG
TGAGAAAGCAGAAGCTGAGACCCAGTTCCTTCCCCAGATGGGTGGCTCAG
CGGAGTGGCAGAGGTGCAGAGATACCACTAGCCCCTAGATGTACAGACGT
CTTGGTCTTTACCCCCTCTTGCCATCTAAGTTCTCAGTGCTGTAATAAGA
CACCATAACCAAAAAACTTGTCGAGAAAAGTTCTTTTGGTTCTACATCAT
AGCCTATCATCTAAGAAAGCCAGGGCAGAAACTCGAGGCTGGACCCGAAG
CAGCAGCTGTGGTTTTTTGCTGCCTGCCCGCTTTCTCTCCTTGGGTTGCT
CAGTCTGCTTTCTTACGCCATTGAGGATCGACCACAGGCCCCAGTGATAG
ACAGCACCTCCAGGAGGCTAGACAACCTCCCCCCACATCAATCATTCATC
AAGAAAATGCCCCCACAGACTTGTCTATGGCAGTCGGAGGCAATGGACGC
ATTTTCTCAAGGATCCTCTGCCTGGATAACTCTAGCTTATGTCAAGATGA
CAGGAAACTAGCCAGGAAACCACACTTGGGACAGTCCGGGATAATCTCCT
TTCTAGAATAGGAAGGTATTTTCTTAAAAGTTTTTCTTTTCCACAATTCA
GTCTATTAGAATTAAGATATACTATTATGTATTATCTTAACCGCTT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTGAAAGAAAATTAAACGAGGCACTTAG
AATTAATTCCCTCCAAACCTGCCATGATAATGCTCTTGGCCCTTTTGAAA
GCAGCGTGGCCTTGCACAAGTCCCTGTTAATTTCCTGCGAATACCAGTTT
TCTTTGGCCACAGCTAATAACTGCCAGGAACACGTCTACCAGCTGAAAAG
GGAGGAGAGAAAAGCCCAGTTGCGCGCTGGGATCATGGGAAGGGCCTGAC
ATGCCCCTGGGGCCCCAACCCAGAGTCTTATTTCACCTTGGATTGAAACG
GGAGATGGAAGTGTATTGCACTCCACCGCTGTCCATAGAGATGGTGGTAA
ACGGGCATACTGAGGCTAAAGCTTGAAAGAGAGTCCAGCTGATTTGCGCT
AGTAAAAATGTAGTGTCGAAAATTGGCGCACGCCTTTAATGCCAGCACTC
CGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACA
AAGTGAGTTCCAGGACATCCAGGGCTATACAGTGAAACCCTGTCTGAAAA
ACAAAACAAAACAAAACAAAAAACCAAACCTCCAAGTTTGGAGACTGTGG
CCAAATGGTGGCACCATTATTGAGCTAAACCTACTTGCCCCCCACCCCCC
AGGAAGTGTGAGGGACTCCCGACATGCACTGCGTTCGAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_p20.b1 MSMg01no174_p20.b1 CHROMAT_FILE:
MSMg01no174_p20.b1 PHD_FILE: MSMg01no174_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:58 2005
         (323 letters)



>mm_chr5_68095884_68096606
          Length = 723

 Score =  561 bits (290), Expect = e-164
 Identities = 311/318 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacactggtgtacaggtgtggcaagcaaggtgttgggtttattttggcaggtgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacactggtgtacaggtgtggcaagcaaggtgttgggtttattttggcaggtgag 264

                                                                       
Query: 65  aaagcagaagctgagacccagttccttccccagatgggtggctcagcggagtggcagagg 124
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagcagaagctgagagaaagttccttccccagatgggtggctcagcggagtggcagagg 324

                                                                       
Query: 125 tgcagagataccactagcccctagatgtacagacgtcttggtctttaccccctcttgcca 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcagagataccactagcctctagatgtacagacgtcttggtctttaccccctcttgcca 384

                                                                       
Query: 185 tctaagttctcagtgctgtaataagacaccataaccaaaaaacttgtcgagaaaagttct 244
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 tctaagttctcagtgctgaaataagacaccataaccaaaaaacttggcgagaaaagttct 444

                                                                       
Query: 245 tttggttctacatcatagcctatcatctaagaaagccagggcagaaactcgaggctggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttggttctacatcatagcctatcatctaagaaagccagggcagaaactcgaggctggac 504

                             
Query: 305 ccgaagcagcagctgtgg 322
           | ||||||||||||||||
Sbjct: 505 cggaagcagcagctgtgg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no174_p20.g1 MSMg01no174_p20.g1 CHROMAT_FILE:
MSMg01no174_p20.g1 PHD_FILE: MSMg01no174_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:58 2005
         (292 letters)



>mm_chr5_68223358_68224049
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttgaaagaaaattaaacgaggcacttagaattaattccctccaaacctgccatgataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccttgaaagaaaattaaacgaggcacttagaattaattccctccaaacctgccatgataa 433

                                                                       
Query: 61  tgctcttggcccttttgaaagcagcgtggccttgcacaagtccctgttaatttcctgcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgctcttggcccttttgaaagcagcgtggccttgcacaagtccctgttaatttcctgcga 373

                                                                       
Query: 121 ataccagttttctttggccacagctaataactgccaggaacacgtctaccagctgaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ataccagttttctttggccacagctaataactgccaggaacacgtctaccagctgaaaag 313

                                                                       
Query: 181 ggaggagagaaaagcccagttgcgcgctgggatcatgggaagggcctgacatgcccctgg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 312 ggaggagagaaaagcccagttgcgcgctgggatcatgggaagcgcctgacatgcccctgg 253

                                                               
Query: 241 ggccccaacccagagtcttatttcaccttggattgaaacgggagatggaagt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggccccaacccagagtcttatttcaccttggattgaaacgggagatggaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)