Query= MSMg01no175_j04.b1 MSMg01no175_j04.b1 CHROMAT_FILE:
MSMg01no175_j04.b1 PHD_FILE: MSMg01no175_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:40 2005
(649 letters)
>mm_chr5_90121157_90122205
Length = 1049
Score = 926 bits (479), Expect = 0.0
Identities = 577/645 (89%), Gaps = 58/645 (8%)
Strand = Plus / Plus
Query: 5 gaattcttgattctagatattcattatatattataaataacatgtttgtgcaataggcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgattctagatattcattatatattataaataacatgtttgtgcaataggcaa 264
Query: 65 gtataaatataaagacatctttaaatcaaattacagaattggtaataccctaattctaca 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtataaatataaagacatctctaaatcaaattacagaattggtaataccctaattctaca 324
Query: 125 gttcttgaagatggcatttgggtaatttgaaagcttcagaaagaactcattgataataca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcttgaagatggcatttgggtaatttgaaagcttcagaaagaactcattgataataca 384
Query: 185 cttataccccaaacactgccaaaggaagttccccatacagaaggcaaataatagtggctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttataccccaaacactgccaaaggaagttccccatacagaaggcaaataatagtggctt 444
Query: 245 aaaagatacatcaaggaggctaagcaagcttaaatataaaaatataaatagccaggcagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaagatacatcaaggaggctaagcaagcttaaatataaaaatataaatagccaggcagt 504
Query: 305 ggtggtgcacgcctttaattccagcacttgggaggcagaggcaggtggatttctgagttc 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtggtgcacgcctttaattctagcacttgggaggcagaggcaggtggatttctgagttc 564
Query: 365 aaggccaacctggtctacagagtaaattccaggacagtcagggctatacagagaaactct 424
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 565 aaggccaacctggtctacagagtgaattccaggacagccagggctatacagagaaactct 624
Query: 425 aatataatctctctctctctctctctctctctctctatatatatatatatatatatatat 484
|| | | | | ||||||||||||||||| | ||||||||||||| |
Sbjct: 625 aacaca--cacactctctctctctctctc-c-----atatatatatata-a--------- 666
Query: 485 atatatatatatatatacacatatatatatgtatatatataataaaaatctaatttttat 544
||||||||||||||||||||
Sbjct: 667 ----------------------------------------aataaaaatctaatttttat 686
Query: 545 ttttgttgcttttaccttttcaatcaagaacaatgtcatacttgttaaactgtatgagac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttttgttgcttttaccttttcaatcaagaacaatgtcatacttgttaaactgtatgagac 746
Query: 605 atatgagaatgtttcacacagaacagggagaaagaaatagaatta 649
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 747 atatgagaatgtttcacacagaatagggagaaagaaatagaatta 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no175_j04.g1 MSMg01no175_j04.g1 CHROMAT_FILE:
MSMg01no175_j04.g1 PHD_FILE: MSMg01no175_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:41 2005
(615 letters)
>mm_chr5_90157206_90158224
Length = 1019
Score = 1110 bits (574), Expect = 0.0
Identities = 601/612 (98%), Gaps = 4/612 (0%)
Strand = Plus / Minus
Query: 4 actgattacaatgtttcaagaaaagagggactttaaaattaatgatcactgaaaaaaaaa 63
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 815 actgcttacaatgtttcaagaaaagagggactttaaaattaatgataactgaaaaaaaaa 756
Query: 64 t----ctgacacgcaatgacttttcattaaactcaatttatggtttggatattgaagtga 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tctaactgacacgcaatgacttttcattaaactcaatttatggtttggatattgaagtga 696
Query: 120 cttttaaatttttgtttgctaaatgagtataaaaaccaaaccatgcaagcattattgtat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cttttaaatttttgtttgctaaatgagtataaaaaccaaaccatgcaagcattattgtat 636
Query: 180 ttgccacttcaatgagagaatctctatgtaaagatgctgtccattataccttgaaggtgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttgccacttcaatgagagaatctctatgtaaagatgctgtccattataccttgaaggtgg 576
Query: 240 gtagtaacagtgaaacaaatgcaaacacagactgttcacagttaaaactttggggatggg 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 575 gtagtaacagtgaaacaaatgcaaacacggactgttcacagttaaaactttggggatggg 516
Query: 300 ggacttggacagtcatattcattaaagggaagcagagtatattttttaaagcagaaattc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggacttggacagtcatattcattaaagggaagcagagtatattttttaaagcagaaattc 456
Query: 360 ttttatgcaactatagaattgacatcatatgttggcctacatacaggttttgaactatca 419
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttttatgcaactgtagaattgacatcatatgttggcctacatacaggttttgaactatcg 396
Query: 420 ttatacagtttccctgctggtaatagcatttcacagtagtatgtgatatctcggtacaat 479
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 395 ttatacagtttccctgctggtaatggcatttcacagtagtatgtgatatcttggtacaat 336
Query: 480 agcaccctcatacatttggagactggcactataccttattaggaatgacactttccctat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agcaccctcatacatttggagactggcactataccttattaggaatgacactttccctat 276
Query: 540 gaaaaacaagatgtttgtggaaagatcactatctggtaatactaacggcttcatgtgaca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaaaaacaagatgtttgtggaaagatcactatctggtaatactaacggcttcatgtgaca 216
Query: 600 aagttgactttc 611
||||||||||||
Sbjct: 215 aagttgactttc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1019
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1009
Effective search space: 610445
Effective search space used: 610445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
