BAC Information

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BAC

Clone NameMSMg01-176B01
Chromosome5 (Build37)
Map Location 20,173,014 - 20,173,520
singlet/doubletsinglet
Overlap geneMagi2
Upstream geneLOC100041850
Downstream genePhtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176B01.T7 (MSMg01no176_b01.b1)MSMg01-176B01.TJ (MSMg01no176_b01.g1)
ACCAG370874AG370875
length1,2931,247
length of high quality
(start - end)
507 (82 - 588)384 (71 - 454)
definitionCHROMAT_FILE: MSMg01no176_b01.b1 PHD_FILE: MSMg01no176_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:21 2005CHROMAT_FILE: MSMg01no176_b01.g1 PHD_FILE: MSMg01no176_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTCATTGCGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CTCATAGAAAATCGACAGCGTTTATCACCTGTGTACATGAGGATCCAGAT
GGATAGAGAAACCTTCTTAGGACCTGCTCTAGAAGCCACCCAGTTTACAC
TCTGAGAGCATCAAGGCCTATGCCACAATTAGCAGCAACACAGGATAAAA
CTTTAGACTGTACCACTGGGGTACAGGTGCCAGGGCTACACTGGGATGCT
CTACTAAAAACATGTTCGGTGATGGGGAGAAAGGAAGGATGCTCCAGCCC
ACACCCAGAGACTAGAAATCATGCCGCCCAATGTGTAAGACTAGAAATCA
TGCTGCCCAAGGTGTATCAGGCTCTTCCTGATGCTCGGCTTGTGAGCTCA
GCTCTGCTCATGGGCATCCTGTACTAGACATTGGATATCAGCACAGCAGC
CCTGGCACTAAGGTCAAGATGAAACCTGTGGCTAGCTGCCTTGCCTGCTC
CCTACTAAGCATTTCCCTACCATACCATTAACATTTCCCCAACTCTGTTC
TAGTCTCCCAGTCCATGGCATTACGTTTCTCCATAGTTGGCCTGGGAGTG
GGAGTGAAGTCCAAAGCCTGTACCTTACTTCTCTCTCCCTGTCTAGTGCA
AGAAGTATCCGTGCCCTCGCCCTTACCCCATGTGTTTGTGCTCTCCTGTC
TGTTTCCGTTTGTTTAATCCTCTACTCTCCTCCCCGCCTTTCCTAATGTA
TCTTTCCCCTTCTCTTCTCCCTCTCACCACCCCTCTCTCCTCCTCTTCTC
TCCACCCCCCTCTTCTTCCTTTCACTTCCTTTCTTCCTTCCTTCTCTCTC
CCCCCCCTCCTCCTTCCCCTCCTTTTCTCTCTTCCAATTTCTATCTATTC
TCATTCTTTTCCCCCCCCTCTCCCCTCCTCCTCCTCTCTTCTCTTCCTTT
CCTCCACTCCACCCCTCTCTCTTCCACCCTCCTTCATTTTCTCTCTCTCT
TTTTCCTTTTCTCCTCTCTCCACTCACTTTCCCCCCTTCTTACTTTCCCT
CCCTCTTCTTTATTTTCTTTCTCTCTCTATCTTTCTTTTCTCTCCTCCCT
CTTCTCCTCCCTCTCTCGACTTCTTCCTTCTTTACCTCTTCCTTTCACTT
NTCTCTTCTCTTCATTCCTCCTCATCCGTTCTCATCCTTTCCCTCCTTTC
TCTACTATCTCTTTGTCTACCCCTTCTCTTTATTCCTTCTCACCACCTTT
ACTCTTCCTCTCTCCCTCACCTTTCTCTCTCCTCTCTCTCTTC
NNNCCAAGAGTGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGAAGAA
GCAGCTCATTATGAGGGAAAAAGGTACCAGCCAGATAAAGTGCTAGCTAA
TCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGCTT
GGCCTCCGGGCAGTCGGCTTCAAGATGCACTTCCACCCTATGCGGAGCCC
CCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAG
GCAATGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAATATACAAC
AGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCG
GTATAATATGTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGG
AACTTTTTTTACCCCCCCCCTGGTGCAGTTAGACCGGCTTGCCAAAAAGG
GACTAACTCCTGCCGACTGGCAAACGATTGTAAAAGCCGCTCTCCCTAGT
ATGGGCAAATATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGC
GCAGGCCCAAGCAAACGCAGCTGCTTTCACTCCAGAGCAGAGAGATTGGA
CTTTTGACTTGTTAACGGGTCAGGGAGCTTATTCTGCTGATCCAACAAAC
TACCATTGGGGAGCTTATGCCCAAATTTCCTCCACGCCTATTAGGCCCTG
GAAGGCGCTCTCCCGAGCAGGTGAAGCCTCTGGACCACTAACTAAGATCG
TCCCGAGACCCCACGAGTCCTTCTCAGATTTCGTGTCCTAAATGACTCAG
CCCCCCTATTGCTTTTTTGTACATTCCCAACATGCCCCCCCCCCGCTACA
ACTCTCCCTTTTCTTACCAACCCTCCCCTTACTGCCCACTCGTTCCTTCT
TCCTCCAACTAACATATGCTTTCCCACAATTGTCTCTCCTCTTTTCCGTT
TCTTCTTCTCACCCCCTCCTCTCCTCTCTTATTTTTCTCCCTCCTCTCCC
TCCTCATCTCTCCCTACACTCTCCTTGCATCTTACTTTACCCTCTCCCTC
TTCCTCCCCCCTACCCTCCAACCCCTCTTCTCCACTTTCTCTCTTATTTC
CTTCCTCTACTCCCTCTCTTTCTCTCCACACAACTTCTCTTCTCTCCTAT
ATCCCTCCTCTCATTACTCATCTCTTTCTCTCTTCTTTCATTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_b01.b1 MSMg01no176_b01.b1 CHROMAT_FILE:
MSMg01no176_b01.b1 PHD_FILE: MSMg01no176_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:21 2005
         (507 letters)



>mm_chr5_20172814_20173720
          Length = 907

 Score =  973 bits (503), Expect = 0.0
 Identities = 506/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtacatgaggatccagatggatagagaaaccttcttaggacctgctctagaagccaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtacatgaggatccagatggatagagaaaccttcttaggacctgctctagaagccaccc 260

                                                                       
Query: 61  agtttacactctgagagcatcaaggcctatgccacaattagcagcaacacaggataaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttacactctgagagcatcaaggcctatgccacaattagcagcaacacaggataaaac 320

                                                                       
Query: 121 tttagactgtaccactggggtacaggtgccagggctacactgggatgctctactaaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagactgtaccactggggtacaggtgccagggctacactgggatgctctactaaaaac 380

                                                                       
Query: 181 atgttcggtgatggggagaaaggaaggatgctccagcccacacccagagactagaaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttcggtgatggggagaaaggaaggatgctccagcccacacccagagactagaaatca 440

                                                                       
Query: 241 tgccgcccaatgtgtaagactagaaatcatgctgcccaaggtgtatcaggctcttcctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccgcccaatgtgtaagactagaaatcatgctgcccaaggtgtatcaggctcttcctga 500

                                                                       
Query: 301 tgctcggcttgtgagctcagctctgctcatgggcatcctgtactagacattggatatcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctcggcttgtgagctcagctctgctcatgggcatcctgtactagacattggatatcag 560

                                                                       
Query: 361 cacagcagccctggcactaaggtcaagatgaaacctgtggctagctgccttgcctgctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagcagccctggcactaaggtcaagatgaaacctgtggctagctgccttgcctgctcc 620

                                                                       
Query: 421 ctactaagcatttccctaccataccattaacatttccccaactctgttctagtctcccag 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 ctactaagcatttccctaccataccatcaacatttccccaactctgttctagtctcccag 680

                                      
Query: 481 tccatggcattacgtttctccatagtt 507
           |||||||||||||||||||||||||||
Sbjct: 681 tccatggcattacgtttctccatagtt 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)