Query= MSMg01no176_e12.b1 MSMg01no176_e12.b1 CHROMAT_FILE:
MSMg01no176_e12.b1 PHD_FILE: MSMg01no176_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:50 2005
(495 letters)
>mm_chr5_4650173_4651066
Length = 894
Score = 816 bits (422), Expect = 0.0
Identities = 475/502 (94%), Gaps = 20/502 (3%)
Strand = Plus / Plus
Query: 1 ttttcattattttctctcacaaggacatgtgtgtcaactcttttaaaatgatatacaacc 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcattattttctctcaaaaggacatgtgtgtcaactcttttaaaatgatatacaacc 260
Query: 61 gaaatgaattcttgggcttgccaccgctctttctgattagctgagcacacattcgaatca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gaaatgaattcttgggcttgccaccgctctttctgattagctgagcacacattcaaatca 320
Query: 121 ctgctgtggttattaaatccatgtgctgcattccatgcttgggagaggacagacagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctgtggttattaaatccatgtgctgcattccatgcttgggagaggacagacagagag 380
Query: 181 agaaaagaagagagactatgaagggcaatcaggttaaaactggccttggaaactgacttg 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 agaaaagaagagagactatgaagggcaatcaggg-aaaactggccttggaaactgacttg 439
Query: 241 aaaaatacttatcccctccccaatacaatcacacctgttaacattt-------ttttttt 293
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 aaaaatacttatcccctccccaatacaatcacacctgttaacatttgaggggctttt--- 496
Query: 294 ttttcttgacactctgagtatcataaggatatatttgatgaccagaagttttagccatgc 353
||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct: 497 ----cttgacactctgagtatcata-ggatatatttgatgacaagaagttttaggcatgc 551
Query: 354 tgtaccaaactactgagtgacttaaaataacagacagttttttcttagagttctagagat 413
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 552 tgtaccaaactactgagtgacttaaaataaca--cagttttttcttagagttctagagat 609
Query: 414 gggaagatccaaatatgaaagcccacctttaacactggacgagggtcttcttgctgagtt 473
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 610 ggggagatccaaatatgaaagcccacctt--acactggacgagggtcttcttgctgagtt 667
Query: 474 cccacggtgtgggagagatgga 495
||||||| ||||||||||||||
Sbjct: 668 cccacggggtgggagagatgga 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_e12.g1 MSMg01no176_e12.g1 CHROMAT_FILE:
MSMg01no176_e12.g1 PHD_FILE: MSMg01no176_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:50 2005
(584 letters)
>mm_chr5_4782117_4783100
Length = 984
Score = 1029 bits (532), Expect = 0.0
Identities = 571/584 (97%)
Strand = Plus / Minus
Query: 1 gatgaatgctagcaaactaaagtcttctcccctatttttgttaattaatgaattaatcaa 60
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 784 gatgaatgctagcaaactaaagtcttctcctttaattttgttaattaatgaattaatcaa 725
Query: 61 ctaattaggtgttttgttatagcacaaggaatctaatatgggagtgagaagaggattatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctaattaggtgttttgttatagcacaaggaatctaatatgggagtgagaagaggattatc 665
Query: 121 ttgctttcctgattccttgtatttcttttcttttactgagataatctttggtctgtgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttgctttcctgattccttgtatttcttttcttttactgagataatctttggtctgtgact 605
Query: 181 tggggctctcgatgtcctaccttggtccttccacattcttgtgcctttgccactcattat 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tggggttctcgatgtcctaccttggtccttccacattcttgtgcctttgccactcattat 545
Query: 241 tttatcatcagccataggcatcagagtgaaattacaggttgtacccttgtattctgattt 300
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tttatcatcggccataggcagcagagtgaaattacaggttgtacccttgtattctgattt 485
Query: 301 ctgcagaatggcttactttcgttttttatgagtaatgttcaggatgtgatagacacatct 360
|||||||||||||||||||| | | ||| ||||||||||||||||||||||||| |||||
Sbjct: 484 ctgcagaatggcttactttcatatattaggagtaatgttcaggatgtgatagacccatct 425
Query: 361 attttctggtagagaaaacgtcattcaagatgccactaaggatgcatttgaatctactaa 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 attttctggtagagaaaacatcattcaagatgccactaaggatgcatttgaatctactaa 365
Query: 421 catctttaaataccaagggaagggctcttcagcataagaataaactgacctaaatataag 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 364 catctttaaataccaagggaagggctcttcagcataagaataaactgacctaaatatatg 305
Query: 481 gggctttttgcattaagcttgttttaaaagtgaaactagatttcaaaaatctttgtcccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gggctttttgcattaagcttgttttaaaagtgaaactagatttcaaaaatctttgtcccc 245
Query: 541 agagaagcttcccttccctctgagtggacagtgagtgactatgg 584
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agagaagcttcccttccctctgagtggacagtgagtgactatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
