CCATTCATNNNNNNAACAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTCATTTTTCATTTCCCTTTAAACTCTGTGACGGCTC
TTTCTTGGATTACAGGTATCTTTAATATGTGCACAGCATGGCAGTTCTCT
CCTAGGTGACAGTCAAGGACTCCAAGATCTTGTGGTGCCTTGACCATTCA
GCAGATGACCTTGAACATGCCACTGTGTTTAACTTTTGTTCTGTTGAAGG
AAGCAAACCCAAAAATGCTGTCCAAATCTGTGCCAAATCTAATATACCAT
AAAACTGCATTTGCGTGTTACAGACTAAAGATGGGTGCATCTTGCATTTT
TTTCTCTTTGTTTGAAAAGAGCTAAATATCCTTGAACGTTCATTGTATTT
ATTTCTGTGTCTATTTCACTGTAGATAGAAGGGGTGATATATCTGGACCA
GATCCGAGGTTGAGATGATAATGATATGAGATTCCATCCTGCTGTCTAAG
GTTTTAATTGGATTTAAAAAATAAATAAATCCATTCTGAGATGGAGACGG
CACCTTGGCCGTGTTCTTGCACTACAAAAATGATAAGGTTTCCAATGAAT
ATGTCAGCTTCTGGGGTATCCAGGGATGAAACCTGGAACCAGTCATGCCA
AAGGACCTTGAGGCTTCAAGCCTGACCTGCCCCGGCCAGATGCCCATACC
ACTAGAGTGTGGTCGCTAACCGAGGGTTTTAAGATTCAGGCTTTTATAGT
GAAGATAAGTAACTGCACCAGAATAGGAGGAGAAGAAAATGCTGCTTTCC
AGGAACTGTTCTCGTTCCAGTGACTGCTTTCCCTCCAGGGGAAGGAGAAT
GCCTGGACCCTGATCAGTGTAATCTATTTANGAATTTCATGATGGAGAAG
TGAAGAAACCTTATCATCTTTGAATCGCTAAAAGTCCGGGTTTCTTATTA
AAAAATGCTTCCATGAACAGTGGTAACCAAAACAACTTTCAAGCCTCCCT
AACACCTGGTTTTAATAATGCTGTTACCCCCAATAAGTTCCTTTTAAACC
CCCCCTCTCCCCCATATTTTTTATCCTCCCTCTACCCCACTCACTCATTT
TTCCCAAATTCTTTGTTTTCTCAAAAGGCCTCCTTTTTTTAAACATACTT
TCCTCTNCCCCCCTTATTCTTCTCCCCTATATTAAAATATCAG

CGGTTCCNNNNNNTATCATGTGATGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGACCTCTAAAAGCCCCCTTTTAGTC
ACTGAAGAGGCAGAAGAGCCCTTTGACTCCTGAAGCTGCTTGTGTGAAAT
TTGAAGTTCTAGAAGATTCTGAATAACTATAAATTCCAGGTTGGGGGGAG
ATGCTATCTGATTTTCAGTCTGCGTGTCTGTCGTCTCCCCAGAATTTCAC
AGGTAGGATGAGTGTATGTCAGCTTGGCATGAGATGCTCTGTTTTGATCC
ATTTAATTTAGACACTTGTTATAATGTAAGTGCTTTTGCTTTCACTTTGG
CAATTGGCATGCAATTTTAATTAGCACTTGGAACACAATAGAATGTGTTG
ATGAAGCTTTTTTCTTGAAGAAATACGTTCATAATGGCCTGTCTTGAGGA
CTCTGGCAGCATCCAAAAAAGATATTCTCAGTGTACTGCACAGGATTTCT
GAGAACTCAGCCTGGCTGGCATTTATGCTCTTATATATTAATCATCTCAG
TGTTTTCAGATGTCAAAATATTGGCATGAGCAGAGTTGTCATCTATGCTG
CACCAAGAATACTAATTTCTCTATTATCTTGATAAAGTGGCCAATGTATA
AAGAAACGATGTATTTTCTATGCCTTGCCAGACTTCTCTTCCAACCTCGG
CCATCCATGTCTTCCTAAGTTGTTAAGCCCCCACAGCCATCTCTTACCAG
CATTCCTCCTATTGCTCGCTTGCTTCTGTTTATAACTACTTTCCGCCTCT
GGCAACCTGAGACTGCGCTGCATGGCATTTTGTCAAAAATGATTCTCTTC
CCTGTTGACTCTTTTGGTTATTAACATTGTCAACTTGACAGGACCTAAAG
TCCACCCAGAAAAAAACTATGGCGCATGTCTGTGATGGGGGTTTCTAGAC
TGTGGTTAATTCCTGCAAAAAAACCCTTTTTTGTAAAAATTTTTTCTCGG
GTCCCGGGGGCCCAACCCCCTTTGTTTTGTTGAAGAAAAGGGGAAAACAA
ATTTCCCCTCTAAATCTCTGTAAAAATGTCCTCCTCCCCACCTCCCTAAA
AATGGGGAGGACCA

Query= MSMg01no176_i03.b1 MSMg01no176_i03.b1 CHROMAT_FILE:
MSMg01no176_i03.b1 PHD_FILE: MSMg01no176_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:20 2005
         (676 letters)



>mm_chr5_44678487_44679562
          Length = 1076

 Score = 1261 bits (652), Expect = 0.0
 Identities = 670/676 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatgtgcacagcatggcagttctctcctaggtgacagtcaaggactccaagatcttgt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 aatatgtgcacaacatggcagttctctcctaggtgacagtcaaggactccaagatcttgt 817

                                                                       
Query: 61  ggtgccttgaccattcagcagatgaccttgaacatgccactgtgtttaacttttgttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ggtgccttgaccattcagcagatgaccttgaacatgccactgtgtttaacttttgttctg 757

                                                                       
Query: 121 ttgaaggaagcaaacccaaaaatgctgtccaaatctgtgccaaatctaatataccataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ttgaaggaagcaaacccaaaaatgctgtccaaatctgtgccaaatctaatataccataaa 697

                                                                       
Query: 181 actgcatttgcgtgttacagactaaagatgggtgcatcttgcatttttttctctttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 actgcatttgcgtgttacagactaaagatgggtgcatcttgcatttttttctctttgttt 637

                                                                       
Query: 241 gaaaagagctaaatatccttgaacgttcattgtatttatttctgtgtctatttcactgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaaaagagctaaatatccttgaacgttcattgtatttatttctgtgtctatttcactgta 577

                                                                       
Query: 301 gatagaaggggtgatatatctggaccagatccgaggttgagatgataatgatatgagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gatagaaggggtgatatatctggaccagatccgaggttgagatgataatgatatgagatt 517

                                                                       
Query: 361 ccatcctgctgtctaaggttttaattggatttaaaaaataaataaatccattctgagatg 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 516 ccatcctgctgtctaaggttttaattggattaaaaaaataaataaatccattctgagatg 457

                                                                       
Query: 421 gagacggcaccttggccgtgttcttgcactacaaaaatgataaggtttccaatgaatatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 456 gagacggcaccttggccgtgttcttgcactacaaaaatgataaggtttccaatgattatg 397

                                                                       
Query: 481 tcagcttctggggtatccagggatgaaacctggaaccagtcatgccaaaggaccttgagg 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcagcttctggggtatccagagatgaaacctggaaccagtcatgccaaaggaccttgagg 337

                                                                       
Query: 541 cttcaagcctgacctgccccggccagatgcccataccactagagtgtggtcgctaaccga 600
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 336 cttcaagcctgacctgccccggccagatggccataccactagagtgtggtcgctaaccga 277

                                                                       
Query: 601 gggttttaagattcaggcttttatagtgaagataagtaactgcaccagaataggaggaga 660
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 276 gggttttaagattcaggcttttatagtgaagatacgtaactgcaccagaataggaggaga 217

                           
Query: 661 agaaaatgctgctttc 676
           ||||||||||||||||
Sbjct: 216 agaaaatgctgctttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no176_i03.g1 MSMg01no176_i03.g1 CHROMAT_FILE:
MSMg01no176_i03.g1 PHD_FILE: MSMg01no176_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:20 2005
         (409 letters)



>mm_chr5_44625203_44626011
          Length = 809

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagaaatacgttcataatggcctgtcttgaggactctggcagcatccaaaaaagatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaagaaatacgttcataatggcctgtcttgaggactctggcagcatccaaaaaagatat 260

                                                                       
Query: 61  tctcagtgtactgcacaggatttctgagaactcagcctggctggcatttatgctcttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcagtgtactgcacaggatttctgagaactcagcctggctggcatttatgctcttata 320

                                                                       
Query: 121 tattaatcatctcagtgttttcagatgtcaaaatattggcatgagcagagttgtcatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaatcatctcagtgttttcagatgtcaaaatattggcatgagcagagttgtcatcta 380

                                                                       
Query: 181 tgctgcaccaagaatactaatttctctattatcttgataaagtggccaatgtataaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgcaccaagaatactaatttctctattatcttgataaagtggccaatgtataaagaa 440

                                                                       
Query: 241 acgatgtattttctatgccttgccagacttctcttccaacctcggccatccatgtcttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgatgtattttctatgccttgccagacttctcttccaacctcggccatccatgtcttcc 500

                                                                       
Query: 301 taagttgttaagcccccacagccatctcttaccagcattcctcctattgctcgcttgctt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagttgttaagcccccgcagccatctcttaccagcattcctcctattgctcgcttgctt 560

                                                            
Query: 361 ctgtttataactactttccgcctctggcaacctgagactgcgctgcatg 409
           ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtttataactattttccgcctctggcaacctgagactgcgctgcatg 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)