BAC Information

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BAC

Clone NameMSMg01-176J14
Chromosome5 (Build37)
Map Location 117,769,761 - 117,770,047
singlet/doubletsinglet
Overlap geneBC023744
Upstream gene4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359
Downstream geneLOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176J14.T7 (MSMg01no176_j14.b1)MSMg01-176J14.TJ (MSMg01no176_j14.g1)
ACCAG371250AG371251
length1,3221,338
length of high quality
(start - end)
327 (129 - 455)278 (124 - 401)
definitionCHROMAT_FILE: MSMg01no176_j14.b1 PHD_FILE: MSMg01no176_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:33 2005CHROMAT_FILE: MSMg01no176_j14.g1 PHD_FILE: MSMg01no176_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCGGGCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCTGACTCTACCTCCCACTTAATAGGCTTTCCCCCAAGNTCTTACT
ACATAGTCCGCACTTGCCTACACCTCCTCCTATGTTGTAGATCAGGCTGC
CTTTGAACTCCCAGAGATCCACCTGCCTCTACCTCCTGAGTGCTGGAAGT
TTAAAGGCGTGTGCCACCACCAGGCTTGGCTTCCAGGTGGTTTTTAATGT
ATTAAACCAATGAACAAAACTGTGTGTGCCCACGTCACTTGCTCTCATAG
ACTCCAGCGCTGGACAGTCACTAACTTTCTGTCTGATTGTGGACATTTCA
TTATGTGTGGGATCAGACCCCATGTGGCACTGTGTGAGTATGTGAGAGCC
TTCTTTTTTGCATGATATTTTCTAGACTCATCCATGTTGTATCATGTGCC
ACCTGTGTCAATACTCCCTTCCCTTTTAAGACCAGCAGTGCATGCCGGTG
ACACTGTCTCCTGTGTGTTCATCAGTTGATGGGCACTTGAGGTGTTTCCA
TTGCTGATCGTAACATTGATGTGAGCATCCACATATGCATTGCTGTGTGT
GTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGCGCACTCCCTG
GCTTTGAAGTTACAGACAATCTTGAGTGTTGGTATTCAGGATAGCACAAA
GCACTCGTTATGGCTAAAGCTGTCTCTCCGCCCCCCATGTATACATTTTC
ATATGACCATATGCCTTTCCATTCTCTGCATTATTTGCCTAGGAACTGCC
CTTGCTCTCTTTTTATTCTGTCTCGGTATCTTAATTGAAATTTTCTTTAT
CACTCCTCTCTTCTTATTTATTCCTCTCCCATTCCCTTCATATTTGTTTT
ATTTTATCTATTTCTTCTTCTGCTATTTTTTCTTCTATATTCTCTTTTGT
CTCCTTAACCTTCTCTTTTTCTTTCCTCTACCTCTTGTCTCTTTACTTCT
TCCTATCTTATCTTCCCTTTTTTCCTCTTTTCCCCTTATCTCCTTCTCTT
CTCCCCTTTTTCTCTCTCTCTCTCCTCAATCTGTTTCTCCCTCCTCTTTT
TCTCTTTACTTCCGCGGCTTCTCTTTTTCTCTCTCCTCTCTTCTTTTCTC
TCTATTTCCCAATCTTCTTTATGTCCTTCTCCTTTTTTCTCGTTTTTTCC
ATTTTCTCCCCTTCTTTCCTTCTTACCTTTTCCCTCTCCTCCCTTACCTC
TCTTCTCATCCCTCCTCTCACTTAACTCTTACTATCTCCTCCTCTCTCTC
TTTCTTCTCTTTTTTCTTCTAC
TTTTTACGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTTGAGCTCCCTAAACTCAAACATCCTTTT
CTAATCTACCCTTTAAGATCCCCACACCCCCCCGNACGCGCGCGCGCGCC
TCTTCCCACCCCCCACCCCATCCCCCGCACGCGGTACTTTTCTGCAACAA
CGCTAGGTAGATGTGCTACAATAAGACCATTCGCCACCTATATCTCGTAG
CGGGGGCGGGGGGGGTTAATCTTTGGTCAAGTCTGAAATGACTTGAAAAG
AAAAAGTAAGAGGAGAAGAGAAAAGGAATGGAAGAGGAAAAAGGCGCGGC
TTGGAACGCACGGGTCGGCTCAGGTAGACTCACTCCGGGAGGGCGTAAGG
AATTTTCTCCGTAATTTACAGGTGTAAGGCCGGGTCAATCTGGGAAGCGG
CCATATTTTTACACCCCCCAAATGGAAGCTTACCGCCAGCCGCACCGATG
CGGCGGTCAAAGCCAGAACACGGAGTTAACAACGAAAAGGGAAGGGGTGG
CGGATCGCTTTCCCCTCCACGTGCCCCTCGGTGGTTTCTGCCGCACGTTT
ACTGCGGTGCCTTTACGGTCCCCCCGCTTGTCTCCGCCCCCTCCCTTTAT
TGCATAGTCTTGGCTCCACCTCTCCGCTCCCATTTTACTTCCTAACTCCT
AATTCCCTTCTCTTCTCCCCTCATATCTACTCCTTCTCATACTCTCCACC
TCCCCTATCCTCCTTCCCACTCCCAACACCCCCTCCTTCCTTCTTTTTAT
CTTCTCCCCCTCTTATTCATCTTCACTTCCCAACTCTCCTCATCCTTCCC
TCTCTTTACCTCCCCCTCCCCACTCTCCCCTTCTCCTTCTCTCTTTTCCT
TCATTTTCACTCCATTCTCCCCCCCCTCCATCCCTTTTCTATCTCTCTTC
TTCTTTCACTTTTCTCCCACTCCTCGCCCCTCCCTTCACTTCTTCTCCAT
TCTCCCTCTCCTTCTCATTCTCATCACTCCCTCATCTCACTCTCTCCCCA
TCTCCTTTTCCTATCCCCAACCACCTCCTCTCTTCTCACTTCTTCATTTT
ACTCTCTCTCCATCCCTCTCATCTCTTTTTTCTCTTCTATTTATCTCTCT
CACTCTCGTCCTCTCCACTCCCTTTTCTCTCCTCAACTTCATCCTCTCTA
TATCCCCTTCATCTATCTCTCTTTCCTCATCCTCTCCTCTCCTACTCACT
ATCGATCCTCTCTATATCTCTCTTCTCCACTCTCACTCTCTCTCCTATCA
CTTTTCTTCCCTCTAACACCTTTCTCTTCTTCGTNCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_j14.g1 MSMg01no176_j14.g1 CHROMAT_FILE:
MSMg01no176_j14.g1 PHD_FILE: MSMg01no176_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:33 2005
         (278 letters)



>mm_chr5_117769691_117770370
          Length = 680

 Score =  426 bits (220), Expect = e-123
 Identities = 266/287 (92%), Gaps = 12/287 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   cccccccgna--cgcgcgcgcgcgcctcttcccacccccc-accccatcccccgcacgcg 60
           |||||||| |  |||||||||||||||||||||||||||| |||| | ||||| | ||||
Sbjct: 357 cccccccgcacgcgcgcgcgcgcgcctcttcccaccccccaacccaaaccccctcgcgcg 298

                                                                       
Query: 61  gtacttttctgcaacaacgctaggtagatgtgctacaataagaccattcgccacctatat 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 297 gtacttttctgcaacaacgctaggtagatgagctacaataagaccattcgccacctatat 238

                                                                       
Query: 121 ctcgtagc----gggggcg-----gggggggttaatctttggtcaagtctgaaatgactt 171
           ||||||||    |||||||     ||||||| ||||||||||||||||||||||||||||
Sbjct: 237 ctcgtagcgggggggggcgggggtggggggggtaatctttggtcaagtctgaaatgactt 178

                                                                       
Query: 172 gaaaagaaaaagtaagaggagaagagaaaaggaatggaagaggaaaaaggcgcggcttgg 231
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 caaaagaaaaagtaagaggagaagagaaaaggaatggaagaggaaaaaggcgcggcttgg 118

                                                          
Query: 232 aacgcacgggtcggctcaggtagactcactccgggagggcgtaagga 278
           |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 117 aacgcacgggtcggctcaggtaaactcactccgggagggcgtaagga 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 680
Length adjustment: 9
Effective length of query: 269
Effective length of database: 671
Effective search space:   180499
Effective search space used:   180499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)