BAC Information

Click to search

BAC

Clone NameMSMg01-176J24
Chromosome5 (Build37)
Map Location 71,633,495 - 71,633,825
singlet/doubletsinglet
Overlap geneLOC635092
Upstream geneGabrg1, Gabra2
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176J24.T7 (MSMg01no176_j24.b1)MSMg01-176J24.TJ (MSMg01no176_j24.g1)
ACCAG371269AG371270
length1,2021,213
length of high quality
(start - end)
335 (118 - 452)332 (122 - 453)
definitionCHROMAT_FILE: MSMg01no176_j24.b1 PHD_FILE: MSMg01no176_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:36 2005CHROMAT_FILE: MSMg01no176_j24.g1 PHD_FILE: MSMg01no176_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGTTCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTCTGTTTATCTCTGTACTTTTTAGTTACTTGAGTTATTTGGTTTGTTGA
TGTCAAACCTTTTTAATTATTTATATATTTTAATATTAATCCTTTGTCAG
ATGTAGGGTGGATGAATATCTTCTGTAGGTTGCTGTTCTGTCCTATTGAT
AGTGTCCTTATCTTAGCAAAAACTTTTTAGTTTCATGAGGTCCTATTTAT
TAATTCTTCACCTTAATGCCTGAGCCATTGGTGTTCTGTTCAGGAATTTG
TCTCCTGTGTCAATGTATTCAGGGTTGTTCCCCACTTCCTCTTCTATTAG
ATTTAGTGTGTCTGGGTTTATGTTGAGGTCTATGATTGACTTGGACTTTT
TTTTTGTGTAAGGCAATAGATATTGCCTTATTTGCATTCTTCTATATTTT
TTTCTCCCCCCCCACCAGGACCATTCGTTGAACATGTTTTAATCTTCCCA
TTGTATGGTTTAGGCTTCTACATCAAATATCATGTGTCTATAAGTATGTG
AGTTTATTTCTGGCTATTAGATTCTATTCCATTAATCAACCTGTCTGTTT
TTATGCCAATACTACGCTATTTGTATTACTATTGTTTTTTAGTACAGCTT
GAAATCAGGTATGGTGATACCTCCAGAAGTTCTTTTGTTTTACTGGTTTT
CTAACTGGATTAAATTGCTTTGGATGACTTAACTTTAAGTCTGTGTACTA
CTAACTACTTTATCTCATGTGATTGATATCCCATTGTATATGCCAAATTG
GACTTTATTGCTGATTTGTGTTTATATTTCCTAAAATTATTTTTGAATTT
TTTACCTTATATATTTTTCATATAATCTTGTTAATAATGTCAAATTGTTA
TTTATTTCCATGTTTTCTTTACCTACTTTTCATCTTCTAATTTCTGAGAT
TTATTTCCCTTTTTTTTTCTTTTGATCCATTTTTTATTTTTGTCTTTTTA
TATTATAATTCCTTTTTTTTCTTCCCTCTTTATTATTTATTTCTTTCCTC
TTTCTTTCTTTCCTTTTTTTCTTCTTCTTCTTCTTCTTTTTTCTCTTTCT
CTTACTATTCCTTTTTTTTTCTTTTCTATCTGTCTATTTCTTCTTTTTCT
ATATTTTTCTTATTCACTCTTCTTTTCTCTAATTTCATTCTTTTTTCATT
TA
NNNCCACGCATGGAGNCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTTTATGCTCTGCAAGGCCAGAGGACTATGA
AATGGCCCCTTTGAAGTGCCTATAGCACATGGATTTTGTAGACGTGCTAA
ATAAGTGCTCTGTTGTAGAAAACAGGATGCAATTTTTCACTTCTTCAGGT
TTAGCTGGGCTCCTGTGGGTGTCATGGAAAGGGCACTGCCAATATACTCA
AGAAACAAATGCTTCTGGTGAGTACTTAGTGTCTATTTGCTTATCAACTT
AGAGAAACATTCTAAGATGATGCTTTCATGTTCATATTAGACACTGAGTA
TCATACACGTTCACATGAGTTCATGATCAGGTTATTTTTGCCTTTAGCTA
CTAGCGATCTTATCTCACATTTTCTTAAAGTTTTAAAAGAAAGTAACATC
TATTGTTCTTACCTAACTCATCAGTGCAGCACGCCATTTAAATTTTATTC
ATTGGTGACTTTGTATAAATCTTCAGGTATTGTTTACAATCTAAGTTGAC
CTTCTTAATAGTTCCAACTGTTAAAATAGTTTATAACCTAATTCCCTTTG
ACTTATATTCCTTTCTTCAGGAGTCAGAGCACTACATAAATTATTTTGTT
TTAATGACAGTGTTCTTGCAATAAAAGACATGGGAAATGATACAAAGGCT
TGCTAGCTCGTCTCTAAGTTCTTTAAAATATGTAAATTATGTGCATATAA
TGTGTTTTCTTTTTTCCGTTTTATTTATTTTGCATTATGTTTACAGACCC
GGACATATGGGCTAAAGGCTGAATGTTCTCCCTACGGAAAAGATGTTTGC
TGCCATAATGCAGCCCATGTTCATCACCTTTAGCAGCAGAATCTGAATTC
CCAGCTGAAAATGCACAACTAGCATGGAAAATACTGTTCTCCGACCAACT
TTGACCAAGACCTTTATTTTAATTAAATTATCCCTACCCCCTTGCCCCTT
TGGTCCTATATAAAAAAACCTGTGCCCAACTATTGGCCGCGTGTGTTCAT
TTTTCTCCCCCCTTACTTCCCCCCCCCTCATTTCCCATTCATCCTCTTAA
TTTCTTTCCTCTTTTCCCCTCTTTCTCTCTTTTCCTGTCATCAACCCCCC
ACATTCCTTCCTCTCTTTTTCTTCTCGTCTTCCTCCCACCTCTTAATCCT
CCGTCTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_j24.g1 MSMg01no176_j24.g1 CHROMAT_FILE:
MSMg01no176_j24.g1 PHD_FILE: MSMg01no176_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:36 2005
         (332 letters)



>mm_chr5_71633295_71634026
          Length = 732

 Score =  596 bits (308), Expect = e-175
 Identities = 326/332 (98%), Gaps = 2/332 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcacatggattttgtagacgtgctaaataagtgctctgttgtagaaaacaggatgca 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagcacatgcattttgtagacgtgctaaataagtgctctgttgtagaaaacaggatgca 260

                                                                       
Query: 61  atttttcacttcttcaggtttagctgggctcctgtgggtgtcatggaaagggcactgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttcacttcttcaggtttagctgggctcctgtgggtgtcatggaaagggcactgcca 320

                                                                       
Query: 121 atatactcaagaaacaaatgcttctggtgagtacttagtgtctatttgcttatcaactta 180
           ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 321 atatactcaagaaacaaatgcttctggtgagtagttaatgcctatttgcttatcaactta 380

                                                                       
Query: 181 gagaaacattctaagatgatgctttcatgttcatattagacactgagtatcatacacgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaacattctaagatgatgctttcatgttcatattagacactgagtatcatacacgtt 440

                                                                       
Query: 241 cacatgagttcatgatcaggttatttttgcctttagctact-agcgatcttatctcacat 299
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 441 cacatgagttcatgatcaggttatttttgcctttagcta-tgagcgatcttatctcacat 499

                                           
Query: 300 tttcttaaagttttaaaagaaagtaacatcta 331
           ||||||||||||||||||||||||||||||||
Sbjct: 500 tttcttaaagttttaaaagaaagtaacatcta 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)