Query= MSMg01no176_l23.b1 MSMg01no176_l23.b1 CHROMAT_FILE:
MSMg01no176_l23.b1 PHD_FILE: MSMg01no176_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:53 2005
(746 letters)
>mm_chr5_90936111_90937256
Length = 1146
Score = 1350 bits (698), Expect = 0.0
Identities = 734/746 (98%)
Strand = Plus / Minus
Query: 1 ctttagctcagaaacagtctatgttaccactaattccttatatatttaattatcctatta 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1127 ctttagctcagaaacagtctatgttaccattaattccttatatatttaattatcctatta 1068
Query: 61 ggaaataaataaaaattactgattctcttaatatagaataaatttttaattctctctagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 ggaaataaataaaaattactgattctcttaatatagaataaatttttaattctctctagt 1008
Query: 121 acttagaaaaatattagtttttaaaccccataagattttcaaaaaaataaataaataaat 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1007 acttagaaaaatattagtttttaaaccccataagattttcaaataaataaataaataaat 948
Query: 181 tggtcattattttaagtttcggatttgtaggaccgtatttctgttctttactgcaggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 tggtcattattttaagtttcggatttgtaggaccgtatttctgttctttactgcaggatg 888
Query: 241 caccacaccgagactttagggaatgagatgttcatacgcacctcttctgtgaaacagact 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 887 caccacaccgagactttagggaatgagatgttcatacacacctcttctgtgaaacagact 828
Query: 301 tcctggtcctgggctttgcattacttctccaaaaggcccgagaaatctgcagtgacggcc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 827 tcctggtcctgggctttgcagcacttctccaaaaggcccgagaaatctgcagtgacagcc 768
Query: 361 gccagctgctcctctgtcagttcaggcttttgcttcaccaggttaatgagaagcctgggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gccagctgctcctctgtcagttcaggcttttgcttcaccaggttaatgagaagcctgggg 708
Query: 421 tttagaacaaaagaaaatacaggcgagtctgccatgcaaagcaatccgcaccttcccaga 480
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 707 tttagaacaaaagaaaatacaggcgagtctgccatgcaaagaaagccgcaccttcccaga 648
Query: 481 acgtttagtagagcgttttcagaaccctagcagccatcctcagccgcctctccttccgct 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 647 acgtttagtagagcgttttcagaaccctagcagccatcctcagctgcctctccttccgct 588
Query: 541 ccttgccaaggttagcccttacacttctcagcctgaagcacaccacgccgctggcctgcc 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccgtgccaaggttagcccttacacttctcagcctgaagcacaccacgccgctggcctgcc 528
Query: 601 ctggtgcaggttacagaggaatcactacctcaggactctgtgtgcctttatggagaggga 660
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 527 ctggtgcaggttacagaggaatcactatgtcaggactctgtgtgcctttatggagaggga 468
Query: 661 actgtgctctctgtcttgattacctacattatccttgcctcttggctcctctgcagtgcg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 actgtgctctctgtcttgattacctacattatccttgcctcttggctcctctgcagtgcg 408
Query: 721 gttaggcatacccacaagcccagatg 746
||||||||||||||||||||||||||
Sbjct: 407 gttaggcatacccacaagcccagatg 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space: 836096
Effective search space used: 836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no176_l23.g1 MSMg01no176_l23.g1 CHROMAT_FILE:
MSMg01no176_l23.g1 PHD_FILE: MSMg01no176_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:53 2005
(384 letters)
>mm_chr5_90850386_90851169
Length = 784
Score = 607 bits (314), Expect = e-178
Identities = 355/384 (92%), Gaps = 26/384 (6%)
Strand = Plus / Plus
Query: 1 agataatcaggttcacattgttgggtggcaagctccttttcccaggaaactatctacttg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agataatcaggttcacattgttgggtggcaagctccttttcccacgaaactatctacttg 260
Query: 61 gccctgttcacacttatagatgctggatgggacccagctttgacagaatgtcaattttac 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gccctattcacacttatagatgctggatgggacccagctttgacagaatgtcaatgttac 320
Query: 121 ttagctcatgactggatatacttaagaaaagatcacacacacacacacacacacacacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagctcatgactggatatacttaagaaaagatcacacacacacacacacacacacacac 380
Query: 181 acacacacacacacacacacacacacacacactcctataattcagctacttgggaagcta 240
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 acacacacacacac------------------tcctataattcagctacttgggaagcta 422
Query: 241 aggcatgaggaggccaatctggggaaccttgtgagcacttattcgtttgtttataggata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aggcatgaggaggccaatctggggaaccttgtgagcacttattcgtttgtttataggata 482
Query: 301 aacatagacatgctccaatgggagatgatt----gttttacagggaggataccacgtgag 356
|||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 483 aacatagacatgctccaatgggagatgattagggg----acagggaggataccacgtgag 538
Query: 357 aagaaaggctgagtaatctatctg 380
||||||||||||||||||||||||
Sbjct: 539 aagaaaggctgagtaatctatctg 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
