Query= MSMg01no176_m04.b1 MSMg01no176_m04.b1 CHROMAT_FILE:
MSMg01no176_m04.b1 PHD_FILE: MSMg01no176_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:55 2005
(568 letters)
>mm_chr5_117167266_117168237
Length = 972
Score = 1069 bits (553), Expect = 0.0
Identities = 566/573 (98%), Gaps = 6/573 (1%)
Strand = Plus / Plus
Query: 1 tagacactgagctcagcacctggacacagaatatgatgaaccagtgagaggccattacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagacactgagctcagcacctggacacagaatatgatgaaccagtgagaggccattacag 260
Query: 61 gaacactccactctctgatggtgtatagaaaccagccagttgtcatcgagaaaagagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacactccactctctgatggtgtatagaaaccagccagttgtcatcgagaaaagagcaa 320
Query: 121 agcaggcacggaccagagcggtgagtggtagctaaaccaagtccctctggtgcccttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaggcacggaccagagcggtgagtggtagctaaaccaagtccctctggtgcccttctc 380
Query: 181 aggtcacagcatcacagtgttgcatcatgggaacaaacatctcccatctcttccactgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtcacagcatcacagtgttgcatcatgggaacaaacatctcccatctcttccactgag 440
Query: 241 taatccacagtaatgccttaccctgttttcttctggtcttctgtaattcactgaacactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatccacagtaatgccttaccctgttttcttctggtcttctgtaattcactgaacactg 500
Query: 301 cctttaaacatgagtcccccc-----tttgtctttggtccttgctgaggagtctgcatta 355
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttaaacatgagtccccccccccctttgtctttggtccttgctgaggagtctgcatta 560
Query: 356 gccccctttctaaatttcccagaagtttcttcaggagtaaccagggtgtcttgactctta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccccctttctaaatttcccagaagtttcttcaggagtaaccagggtgtcttgactctta 620
Query: 416 aggcttatgtggaagattcaggaagcctgcatttttttaaacaagatttccccattgtct 475
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 621 aggcttatgtggaagattcaggaagcctgcatttttttta-caagatttccccattgtct 679
Query: 476 tgtgagtgctggattcaggaaacagagtcagtagactcatccattcagcaatgatttgta 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgagtgctggattcaggaaacagagtcagtagactcatccattcagcaatgatttgta 739
Query: 536 gagctttagagagtctacactatagactcttcc 568
|||||||||||||||||||||||||||||||||
Sbjct: 740 gagctttagagagtctacactatagactcttcc 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 972
Length adjustment: 10
Effective length of query: 558
Effective length of database: 962
Effective search space: 536796
Effective search space used: 536796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_m04.g1 MSMg01no176_m04.g1 CHROMAT_FILE:
MSMg01no176_m04.g1 PHD_FILE: MSMg01no176_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:55 2005
(334 letters)
>mm_chr5_117318558_117319291
Length = 734
Score = 600 bits (310), Expect = e-176
Identities = 328/334 (98%)
Strand = Plus / Minus
Query: 1 ttgactttccgagatgggcagatggaggctcagagcaacaggacaatgtccctttcatgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 534 ttgactttccgagatgggcagatggaggctcagagcaacaggacaatgtccccttcatgc 475
Query: 61 aggtagcctaaaaccttcccttagcctccctcccgaccgcagatttcccagggagctgct 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aggtagaataaaaccttcccttagcctccctcccgaccgcagatttcccagggagctgct 415
Query: 121 tccagactgacgcgggctttccctttggctcttggtggacagggggctccacgcctcgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tccagactgacgcgggctttccctttggctcttggtggacagggggctccacgcctcgtc 355
Query: 181 ctgagcttcacctgtctgatgctgattgagataaagtctctctgatcacttagctatgct 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 354 ctgagcttcacctgtctgatgctgattgagataaagtctctctgatcatttagctatgct 295
Query: 241 ggtcacacccccatgtcccagaacagtgttgagaaatgcaatttgtggtatcccaggtgg 300
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 294 ggtcacacccccatgtcccagaacggtgttgagaaatgcaatttgtggcatcccaggtgg 235
Query: 301 aaaatttctgattctctctgacggaggatgtcga 334
||||||||||||||||||||||||||||||||||
Sbjct: 234 aaaatttctgattctctctgacggaggatgtcga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
