Query= MSMg01no176_m12.b1 MSMg01no176_m12.b1 CHROMAT_FILE:
MSMg01no176_m12.b1 PHD_FILE: MSMg01no176_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:58 2005
(418 letters)
>mm_chr5_117167267_117168089
Length = 823
Score = 772 bits (399), Expect = 0.0
Identities = 415/423 (98%), Gaps = 5/423 (1%)
Strand = Plus / Plus
Query: 1 agacactgagcccagcacctggacacagaatatgatgaaccagtgagaggccattacagg 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacactgagctcagcacctggacacagaatatgatgaaccagtgagaggccattacagg 260
Query: 61 aacactccactctctgatggtgtatagaaaccagccagttgtcatcgagaaaagagcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacactccactctctgatggtgtatagaaaccagccagttgtcatcgagaaaagagcaaa 320
Query: 121 gcaggcacggaccagagcggtgagtggtagctaaaccaagtccctctggtgcccttctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggcacggaccagagcggtgagtggtagctaaaccaagtccctctggtgcccttctca 380
Query: 181 ggtcacagcatcacagtgttgcatcatgggaacaaacatctcccatctcttccactgagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcacagcatcacagtgttgcatcatgggaacaaacatctcccatctcttccactgagt 440
Query: 241 aatccacagtaatgccttaccctgttttcttctggtcttctgtttttcactgaacactgc 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 aatccacagtaatgccttaccctgttttcttctggtcttctgtaattcactgaacactgc 500
Query: 301 ctttaaacatgagtcccccc-----tttgtctttggtccttgctgaggagtctgcattag 355
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttaaacatgagtccccccccccctttgtctttggtccttgctgaggagtctgcattag 560
Query: 356 ccccctttctaaatttcccagaagtttcttcaggagtaaccagggtgtcttgactcttaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccctttctaaatttcccagaagtttcttcaggagtaaccagggtgtcttgactcttaa 620
Query: 416 ggc 418
|||
Sbjct: 621 ggc 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 823
Length adjustment: 9
Effective length of query: 409
Effective length of database: 814
Effective search space: 332926
Effective search space used: 332926
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_m12.g1 MSMg01no176_m12.g1 CHROMAT_FILE:
MSMg01no176_m12.g1 PHD_FILE: MSMg01no176_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:58 2005
(454 letters)
>mm_chr5_117318472_117319326
Length = 855
Score = 779 bits (403), Expect = 0.0
Identities = 442/459 (96%), Gaps = 9/459 (1%)
Strand = Plus / Minus
Query: 1 cttttccaggttcattctccagcccagccattagtttgactttccgagatgggcagatgg 60
||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||
Sbjct: 655 cttttccaggttcattccccagtccagagattaatttgactttccgagatgggcagatgg 596
Query: 61 aggctcagagcaacaggacaatgtccctttcatgcaggtagaataaaaccttcccttagc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 595 aggctcagagcaacaggacaatgtccccttcatgcaggtagaataaaaccttcccttagc 536
Query: 121 ctccctcccgaccgcagatttcccagggagctgcttccagactgacgcgggctttccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctccctcccgaccgcagatttcccagggagctgcttccagactgacgcgggctttccctt 476
Query: 181 tggctcttggtggacagggggctccacgcctcgtcctgagcttcacctgtctgatgctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tggctcttggtggacagggggctccacgcctcgtcctgagcttcacctgtctgatgctga 416
Query: 241 ttgagataaagtctctctgatcacttagctatgctggtcacacccccatgtcccagaaca 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 415 ttgagataaagtctctctgatcatttagctatgctggtcacacccccatgtcccagaacg 356
Query: 301 gtgttgagaaatgcaatttgtg---tttttcccaggtggaaaatttctgattctctctga 357
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 355 gtgttgagaaatgcaatttgtggcat----cccaggtggaaaatttctgattctctctga 300
Query: 358 cggaggatgtcgaggtggattggtctctagcctggtggaaatataaacgtccgctctgag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cggaggatgtcgaggtggattggtctctagcctggtggaaatataaacgtccgctctgag 240
Query: 418 aataaaggagctaggtgcggggg--aaaggggggatgag 454
||||||||||||||||||||||| ||||||||||||||
Sbjct: 239 aataaaggagctaggtgcgggggggaaaggggggatgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space: 375180
Effective search space used: 375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
