Query= MSMg01no176_m20.b1 MSMg01no176_m20.b1 CHROMAT_FILE:
MSMg01no176_m20.b1 PHD_FILE: MSMg01no176_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:00 2005
(270 letters)
>mm_chr5_35975372_35976041
Length = 670
Score = 511 bits (264), Expect = e-149
Identities = 267/268 (99%)
Strand = Plus / Minus
Query: 1 gcccgagagccaggacggacagactgggcttctcgccacctcctttctggaaggcatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gcccgagagccaggacggacagactgggcttctcgccacctcctttctggaaggcatggg 409
Query: 61 ctccttcgcttgactctggcaagcacactggactggctgtgaggtccccaagggacaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 408 ctccttcgcttgactctggcaagcacactggactggctgtgaggtccccaagggacatgg 349
Query: 121 agaagtgagacacttcccgacatggccatggcaggggaggtgattgtcctaatgagaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agaagtgagacacttcccgacatggccatggcaggggaggtgattgtcctaatgagaacc 289
Query: 181 agaggtagctggcaggctctctcttgcgtcccatagttgttgaattgccagactgggatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agaggtagctggcaggctctctcttgcgtcccatagttgttgaattgccagactgggatc 229
Query: 241 acaggacctgcagtctgcagagatggct 268
||||||||||||||||||||||||||||
Sbjct: 228 acaggacctgcagtctgcagagatggct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no176_m20.g1 MSMg01no176_m20.g1 CHROMAT_FILE:
MSMg01no176_m20.g1 PHD_FILE: MSMg01no176_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:01 2005
(424 letters)
>mm_chr5_35801326_35802149
Length = 824
Score = 743 bits (384), Expect = 0.0
Identities = 414/430 (96%), Gaps = 12/430 (2%)
Strand = Plus / Plus
Query: 1 acccccaacggggacatttagttggttttgttacctagtttgtctaaactaaaggtgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccccaacggggacatttagttggttttgttacctagtttgtctaaactaaaggtgagt 260
Query: 61 gactcccgcagtcatcaaatgacaaggactgggatctgcacactgtcagcttcaatgggg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactcccgcagtcatcaaatcacaaggactgggatctgcacactgtcagcttcaatgggg 320
Query: 121 gcattgggtatcaatctgtggatccgtcatgctgcatagggaagagctggcacatttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattgggtatcaatctgtggatccgtcatgctgcatagggaagagctggcacatttatc 380
Query: 181 ccaatgagaagagagacccagcaagtgagacacactgggtactggcctgtgggtcccagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatgagaagagagacccagcaagtgagacacactgggtactggcctgtgggtcccagg 440
Query: 241 tgctggcatgaactcatttatatctgagtttccctgtttatttttta---t---aagaat 294
|||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 441 tgctggcatgaactcatttatatctgagtttccctgttta------agaatgagaagaat 494
Query: 295 taatgctagactagcacagaccacagaagtgtcacaactctccagtgacccagtgaggca 354
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 taatgctagactagcacagaccacagaagtgtcacaactctccagtgaggtagtgaggca 554
Query: 355 gtggatgactttgaaacttcatttcctgggcaccctgtagatgacgtgtgtgtgtgtgtg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtggatgactttgaaacttcatttcctgggcaccctgtagatgacgtgtgtgtgtgtgtg 614
Query: 415 tgtgtgtgtg 424
||||||||||
Sbjct: 615 tgtgtgtgtg 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
